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[174476_at]

Description CEK008F6R_rc /REP_DB=TREMBL Accession /GB=D28055 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8f6 : 3prime end, single read.
Cluster 6grp_total > 28      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 34.1
(3)
A 		11.3
(-1.2)
A 		1.8
(-3)
A 		18.7
(0.1)
A 		32
B 43.3
(3)
A 		2.9
(-3)
A 		6.6
(-2.5)
A 		24.6
(0.2)
A 		40
C 16.1
(-1.2)
A 		5.6
(-2.6)
A 		2.7
(-3)
A 		47.9
(3)
A 		45
avr 31.2
(3) 		6.6
(-2.4) 		3.7
(-3) 		30.4
(2.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.5
(0.6)
A 		1.9
(-2.6)
A 		5.1
(-0.4)
A 		1.4
(-3)
A 		8.8
(2.2)
A 		9.9
(3)
A 		9
B 14
(3)
A 		3
(-3)
A 		5
(-1.9)
A 		3.7
(-2.6)
A 		3.4
(-2.8)
A 		4
(-2.5)
A 		11
C 2.5
(-2.1)
A 		5.8
(3)
A 		1.9
(-3)
A 		3.1
(-1.2)
A 		2.8
(-1.6)
A 		2.9
(-1.5)
A 		4
avr 7.7
(3) 		3.6
(-1.9) 		4
(-1.4) 		2.7
(-3) 		5
(-0.2) 		5.6
(0.5) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.4
(3)
A 		2.4
(-2)
A 		0.5
(-3)
A 		2.7
(-1.9)
A 		12
B 13.8
(3)
A 		0.7
(-3)
A 		1.5
(-2.6)
A 		5.2
(-0.9)
A 		13
C 5.3
(0.7)
A 		1.6
(-2.4)
A 		0.9
(-3)
A 		8.1
(3)
A 		7
avr 10.5
(3) 		1.6
(-2.6) 		1
(-3) 		5.3
(-0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.2
(-0.8)
A 		0.7
(-2)
A 		1.1
(-1)
A 		0.3
(-3)
A 		2.7
(3)
A 		2.4
(2.3)
A 		2
B 4.9
(3)
A 		1
(-3)
A 		1.2
(-2.7)
A 		1
(-3)
A 		1.4
(-2.4)
A 		1.5
(-2.2)
A 		4
C 0.9
(-1.2)
A 		1.8
(3)
A 		0.5
(-3)
A 		0.6
(-2.5)
A 		0.9
(-1.2)
A 		1
(-0.7)
A 		1
avr 2.3
(3) 		1.2
(-0.9) 		0.9
(-1.9) 		0.6
(-3) 		1.7
(0.9) 		1.6
(0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21125
Sequence Type Exemplar sequence
Representative Public ID CEK008F6R NCBI
Target Description CEK008F6R_rc /REP_DB=TREMBL Accession /GB=D28055 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065845 NCBI Caenorhabditis elegans B0244.11 (B0244.11) mRNA, complete cds. 11/11 None
B0244.11 ENSEMBL cdna:known chromosome:CEL140:III:5767831:5768614:1 gene:B0244.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5768260-5768603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0244.11
Entrez Gene 175808 Entrez gene
SwissProt Q95ZZ9 EMBL-EBI
WormBase CE26789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68669 Hypothetical protein B0244.11 [Caenorhabditis elegans] ref|NP_498246.1| B0244.11 [Caenorhabditis elegans] 4.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498246.1 2 30-52,62-84
B0244.11 2 30-52,62-84
Sequence
Target Sequence 
>C. ELEGANS:174476_AT
gaaccaccgcgcagatgagagtactgcggaccaactagtggtgttggcctcgccttcaaa
gttcgctgattggtcagtgcaatcattcgcgcgctaattcaaaattgggacgtttctgaa
tagtgtattttcttaatcagattaattttgaaatttcgaatttcttcaatttctttctga
caacattatccacaagcgtttctgcaaacttttctacgatgtatcatactttacgcgcaa
atagaggtgcgttttaccacttaatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCACCGCGCAGATGAGAGTACT 391 345 53 Antisense
GAGAGTACTGCGGACCAACTAGTGG 384 395 69 Antisense
CCAACTAGTGGTGTTGGCCTCGCCT 64 269 83 Antisense
CTCGCCTTCAAAGTTCGCTGATTGG 41 235 101 Antisense
ATTGGTCAGTGCAATCATTCGCGCG 219 5 121 Antisense
AATCATTCGCGCGCTAATTCAAAAT 253 171 133 Antisense
TCTTCAATTTCTTTCTGACAACATT 179 617 215 Antisense
ACATTATCCACAAGCGTTTCTGCAA 425 105 235 Antisense
GTTTCTGCAAACTTTTCTACGATGT 294 451 250 Antisense
TACGATGTATCATACTTTACGCGCA 417 647 267 Antisense
GAGGTGCGTTTTACCACTTAATGTT 653 401 296 Antisense
Sequence Source Affymetrix Proprietary Database