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[174475_s_at]

Description C52866_rc /REP_DB=TREMBL Accession /GB=C52866 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk285e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 388.1
(3)
P 		320.8
(0.1)
P 		255.6
(-2.7)
P 		247.5
(-3)
P 		141
B 351.9
(3)
P 		198.8
(-3)
P 		234.1
(-1.6)
P 		258.6
(-0.7)
P 		153
C 359.9
(3)
P 		195.1
(-3)
P 		304.6
(1)
P 		296
(0.7)
P 		165
avr 366.6
(3) 		238.2
(-3) 		264.8
(-1.8) 		267.4
(-1.6) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 317.9
(2.1)
P 		336.5
(3)
P 		210.2
(-3)
P 		238.2
(-1.7)
P 		301.1
(1.3)
P 		327.3
(2.6)
P 		126
B 417.4
(3)
P 		362.4
(1.3)
P 		228.5
(-3)
P 		268.6
(-1.7)
P 		321.5
(-0)
P 		344.8
(0.7)
P 		189
C 481.2
(3)
P 		308.8
(-0.9)
P 		270
(-1.8)
P 		215.3
(-3)
P 		341.3
(-0.2)
P 		238.6
(-2.5)
P 		266
avr 405.5
(3) 		335.9
(0.5) 		236.2
(-3) 		240.7
(-2.8) 		321.3
(0) 		303.6
(-0.6) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 141.3
(3)
P 		69.6
(-1.1)
P 		66.8
(-1.3)
P 		36.2
(-3)
P 		105
B 112.2
(3)
P 		49.1
(-3)
P 		54.2
(-2.5)
P 		55.1
(-2.4)
P 		63
C 119.1
(3)
P 		56.1
(-2.5)
P 		106.2
(1.9)
P 		49.9
(-3)
P 		69
avr 124.2
(3) 		58.3
(-2.1) 		75.7
(-0.8) 		47.1
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 58.6
(-2)
P 		119.7
(3)
P 		45.8
(-3)
P 		60.4
(-1.8)
P 		90.9
(0.7)
P 		79.7
(-0.2)
P 		74
B 145.2
(3)
P 		120.6
(1.4)
P 		55.5
(-3)
P 		71.1
(-2)
P 		130.6
(2)
P 		128.6
(1.9)
P 		90
C 178.4
(3)
P 		94.2
(-0.7)
P 		68.7
(-1.9)
P 		43.3
(-3)
P 		110.5
(-0)
P 		79.9
(-1.4)
P 		135
avr 127.4
(3) 		111.5
(1.7) 		56.7
(-3) 		58.3
(-2.9) 		110.7
(1.6) 		96.1
(0.3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21749
Sequence Type Exemplar sequence
Representative Public ID C52866 NCBI
Target Description C52866_rc /REP_DB=TREMBL Accession /GB=C52866 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk285e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072791 NCBI Caenorhabditis elegans F45F2.10 (F45F2.10) mRNA, complete cds. 11/11 A 
F45F2.10 ENSEMBL cdna:known chromosome:CEL140:V:8516167:8520903:-1 gene:F45F2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030766 5/11 Cross Hyb Matching Probes None
GENEFINDER00000030789 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8516740-8517066(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45F2.10
Entrez Gene 179231 Entrez gene
SwissProt Q22974 EMBL-EBI
WormBase CE28828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48031 Hypothetical protein F45F2.10 [Caenorhabditis elegans] ref|NP_505192.1| F45F2.10 [Caenorhabditis elegans] 0.0
blast CAE58384 Hypothetical protein CBG01513 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 5.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 38.0
Sequence
Target Sequence 
>C. ELEGANS:174475_S_AT
tcatccagttcgcaggtgtatgtgaaggacaagactgttgtacaccgcttcccatcaaat
tctatgaaagattttgacaagcctccggtatcttcaaacaaaacgaaaactgattgatct
atcatataaacgatgtcattaaaaacggatttcttatttatcatcatcaatcatccaaat
ggttcaatcacttttgctccacaagtattcaatttctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCCAGTTCGCAGGTGTATGTGA 238 621 13 Antisense
GTTCGCAGGTGTATGTGAAGGACAA 467 439 20 Antisense
GGACAAGACTGTTGTACACCGCTTC 424 525 39 Antisense
ACCGCTTCCCATCAAATTCTATGAA 397 89 56 Antisense
GCTTCCCATCAAATTCTATGAAAGA 68 307 59 Antisense
GATGTCATTAAAAACGGATTTCTTA 536 407 144 Antisense
GGATTTCTTATTTATCATCATCAAT 47 511 159 Antisense
TATTTATCATCATCAATCATCCAAA 214 663 167 Antisense
TCATCCAAATGGTTCAATCACTTTT 100 623 183 Antisense
AATCACTTTTGCTCCACAAGTATTC 695 169 198 Antisense
TGCTCCACAAGTATTCAATTTCTAA 117 583 207 Antisense
Sequence Source Affymetrix Proprietary Database