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[174474_at]

Description C34146_rc /REP_DB=TREMBL Accession /GB=C34146 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk402a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 36      4grp_high_8_8 > 56      6grp_highest_nonorm > 76      6grp_total > 28      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 580
1 2 3 4 range
A 1192.9
(3)
P 		708.3
(-3)
P 		884.6
(-0.8)
P 		921.2
(-0.4)
P 		485
B 1173.1
(3)
P 		918.2
(-3)
P 		1081.2
(0.8)
P 		1099.9
(1.3)
P 		255
C 1115.4
(0.8)
P 		810.2
(-3)
P 		1288.1
(3)
P 		940.2
(-1.4)
P 		478
avr 1160.5
(3) 		812.2
(-3) 		1084.6
(1.7) 		987.1
(0) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 928
1 2 3 4 5 6 range
A 1351.9
(2.1)
P 		1185.8
(0.5)
P 		947.2
(-1.8)
P 		819
(-3)
P 		1443.3
(3)
P 		1249.5
(1.1)
P 		624
B 1693.3
(3)
P 		1123.4
(-0.7)
P 		765.1
(-3)
P 		1227
(-0)
P 		943.2
(-1.8)
P 		1141.3
(-0.6)
P 		928
C 1239.2
(3)
P 		1087.4
(-0.2)
P 		1089.3
(-0.2)
P 		955.5
(-3)
P 		1124.9
(0.6)
P 		1211.5
(2.4)
P 		284
avr 1428.1
(3) 		1132.2
(-0.6) 		933.9
(-3) 		1000.5
(-2.2) 		1170.5
(-0.1) 		1200.8
(0.2) 		494
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 434.3
(3)
P 		153.7
(-2.6)
P 		231.3
(-1.1)
P 		134.9
(-3)
P 		299
B 374.1
(3)
P 		226.8
(-3)
P 		250.5
(-2)
P 		234.4
(-2.7)
P 		147
C 369.2
(1.4)
P 		232.9
(-1.5)
P 		448.9
(3)
P 		158.5
(-3)
P 		290
avr 392.5
(3) 		204.5
(-2.2) 		310.2
(0.7) 		175.9
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 249.2
(-1.9)
P 		421.7
(2.6)
P 		206.3
(-3)
P 		207.7
(-3)
P 		435.5
(3)
P 		304.2
(-0.4)
P 		229
B 589.2
(3)
P 		373.9
(-0.2)
P 		185.8
(-3)
P 		325
(-0.9)
P 		383.2
(-0.1)
P 		425.6
(0.6)
P 		403
C 459.3
(3)
P 		331.8
(0.1)
P 		277.3
(-1.1)
P 		192.1
(-3)
P 		364
(0.9)
P 		405.5
(1.8)
P 		267
avr 432.6
(3) 		375.8
(1.4) 		223.1
(-3) 		241.6
(-2.5) 		394.2
(1.9) 		378.4
(1.4) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21124
Sequence Type Exemplar sequence
Representative Public ID C34146 NCBI
Target Description C34146_rc /REP_DB=TREMBL Accession /GB=C34146 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk402a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48A6B.13.2 ENSEMBL cdna:known chromosome:CEL140:III:11052784:11062878:1 gene:Y48A6B.13 11/11 None
Y48A6B.13.1 ENSEMBL cdna:known chromosome:CEL140:III:11055877:11062878:1 gene:Y48A6B.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11062545-11062824(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y48A6B.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19534 Hypothetical protein Y48A6B.13 [Caenorhabditis elegans] ref|NP_499422.1| Y48A6B.13 [Caenorhabditis elegans] 1.0E-166
blast CAE67616 Hypothetical protein CBG13164 [Caenorhabditis briggsae] 1.0E-73
Sequence
Target Sequence 
>C. ELEGANS:174474_AT
ccccgttctctgtttaagtcacaattttcatatctctcccgatttttaaatatctttgtg
atgtctcacacacataagccccgcccccgtttttaagcaccgcccatttcattgcctttc
tccgccccccgttttctacaatttttccccgttaaattatactccgcccctttcctgcac
acatttcgacttcaatattcatatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGTTCTCTGTTTAAGTCACAAT 353 261 19 Antisense
AAGTCACAATTTTCATATCTCTCCC 379 157 34 Antisense
TCACAATTTTCATATCTCTCCCGAT 298 629 37 Antisense
AATTTTCATATCTCTCCCGATTTTT 465 175 41 Antisense
TTCATATCTCTCCCGATTTTTAAAT 492 687 45 Antisense
CTCTCCCGATTTTTAAATATCTTTG 460 231 52 Antisense
ATATCTTTGTGATGTCTCACACACA 273 21 68 Antisense
TGTGATGTCTCACACACATAAGCCC 119 557 75 Antisense
CCTGCACACATTTCGACTTCAATAT 246 267 192 Antisense
GCACACATTTCGACTTCAATATTCA 690 315 195 Antisense
CATTTCGACTTCAATATTCATATTA 464 215 200 Antisense
Sequence Source Affymetrix Proprietary Database