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[174473_at]

Description CEC768_rc /REP_DB=TREMBL Accession /GB=C07768 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk166a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 78      6grp_total > 39      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4212
1 2 3 4 range
A 2544.5
(-1.8)
P 		2053.1
(-2.7)
P 		1915.8
(-3)
P 		4971.1
(3)
P 		3055
B 2653.8
(-1.1)
P 		1985.1
(-2.2)
P 		1534.1
(-3)
P 		5110.4
(3)
P 		3576
C 2014.1
(-2.7)
P 		2037
(-2.6)
P 		1793.5
(-3)
P 		5746.5
(3)
P 		3953
avr 2404.1
(-1.9) 		2025.1
(-2.5) 		1747.8
(-3) 		5276
(3) 		3528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1160
1 2 3 4 5 6 range
A 1946.9
(2.6)
P 		1394.4
(-2.1)
P 		1338.1
(-2.6)
P 		1286.2
(-3)
P 		1766
(1)
P 		2000.3
(3)
P 		714
B 2040
(3)
P 		1703
(1.1)
P 		974.7
(-3)
P 		1377.7
(-0.7)
P 		1590.4
(0.5)
P 		1973.1
(2.6)
P 		1065
C 2134.8
(3)
P 		1703.9
(0.7)
P 		1396.4
(-0.9)
P 		999.1
(-3)
P 		1777.7
(1.1)
P 		1707.6
(0.7)
P 		1136
avr 2040.6
(3) 		1600.4
(-0.2) 		1236.4
(-2.9) 		1221
(-3) 		1711.4
(0.6) 		1893.7
(1.9) 		820
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 926.4
(3)
P 		445.7
(-3)
P 		500.8
(-2.3)
P 		727.7
(0.5)
P 		481
B 846.3
(1)
P 		490.3
(-1.9)
P 		355.5
(-3)
P 		1089
(3)
P 		734
C 666.7
(-1.7)
P 		585.7
(-3)
P 		625.1
(-2.4)
P 		968.9
(3)
P 		383
avr 813.1
(1.4) 		507.2
(-2.8) 		493.8
(-3) 		928.5
(3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 358.9
(-1.3)
P 		495.9
(2.1)
P 		291.4
(-3)
P 		326.2
(-2.1)
P 		532.9
(3)
P 		487
(1.9)
P 		242
B 709.8
(2.7)
P 		566.9
(1)
P 		236.7
(-3)
P 		364.9
(-1.5)
P 		646.1
(1.9)
P 		735.8
(3)
P 		499
C 791.3
(3)
P 		519.9
(0.2)
P 		355.4
(-1.4)
P 		200.9
(-3)
P 		575.2
(0.8)
P 		571.6
(0.8)
P 		590
avr 620
(3) 		527.6
(1.3) 		294.5
(-3) 		297.3
(-2.9) 		584.7
(2.3) 		598.1
(2.6) 		326
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22155
Sequence Type Exemplar sequence
Representative Public ID CEC768 NCBI
Target Description CEC768_rc /REP_DB=TREMBL Accession /GB=C07768 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk166a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK470.2c ENSEMBL cdna:known chromosome:CEL140:X:4135107:4147801:1 gene:ZK470.2 11/11 None
ZK470.2a ENSEMBL cdna:known chromosome:CEL140:X:4145389:4147801:1 gene:ZK470.2 11/11 None
ZK470.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:4146192:4147801:1 gene:ZK470.2 11/11 None
ZK470.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:4146417:4147801:1 gene:ZK470.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4147447-4147740(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK470.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 1.0E-122
blast AAA80395 Hypothetical protein ZK470.2a [Caenorhabditis elegans] ref|NP_508704.1| ZK470.2a [Caenorhabditis elegans] 4.0E-83
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 6.0E-72
blast CAE68528 Hypothetical protein CBG14352 [Caenorhabditis briggsae] 1.0E-71
blast AAA80395 Hypothetical protein ZK470.2a [Caenorhabditis elegans] ref|NP_508704.1| ZK470.2a [Caenorhabditis elegans] 2.0E-71
blast CAE68528 Hypothetical protein CBG14352 [Caenorhabditis briggsae] 3.0E-61
blast AAA80395 Hypothetical protein ZK470.2a [Caenorhabditis elegans] ref|NP_508704.1| ZK470.2a [Caenorhabditis elegans] 4.0E-25
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 4.0E-25
blast AAA80396 Hypothetical protein ZK470.2b [Caenorhabditis elegans] ref|NP_508705.1| ZK470.2b [Caenorhabditis elegans] 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:174473_AT
tccccatattgctactgacttacgagtgtgaagagacccattggtaaaagaggaaatctc
tgtttttttttctttttttctttgttttgaaatattcgttacccactgttttaggacgaa
tcccatttttttcgattttcctctttgtgatgctatccactttaggataacccgaattat
tattacttcgcacgggtctgggggtagcaccaggtattcttcacctgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCCATATTGCTACTGACTTACGA 220 597 44 Antisense
ACGAGTGTGAAGAGACCCATTGGTA 451 87 65 Antisense
TGAAATATTCGTTACCCACTGTTTT 648 571 131 Antisense
CCCACTGTTTTAGGACGAATCCCAT 17 257 145 Antisense
TAGGACGAATCCCATTTTTTTCGAT 606 651 155 Antisense
TTTTCGATTTTCCTCTTTGTGATGC 451 677 172 Antisense
TCCTCTTTGTGATGCTATCCACTTT 318 593 182 Antisense
TCCACTTTAGGATAACCCGAATTAT 155 301 199 Antisense
TATTATTACTTCGCACGGGTCTGGG 623 611 221 Antisense
CACGGGTCTGGGGGTAGCACCAGGT 384 197 234 Antisense
GCACCAGGTATTCTTCACCTGTCAT 139 315 250 Antisense
Sequence Source Affymetrix Proprietary Database