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[174472_at]

Description C30435_rc /REP_DB=TREMBL Accession /GB=C30435 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247e12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 88      6grp_total > 87      4grp_total > 24      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 81
(2.2)
P 		58.5
(-3)
A 		74.9
(0.8)
A 		84.3
(3)
P 		26
B 48.9
(-3)
A 		92.9
(1.6)
A 		66.6
(-1.2)
P 		106.6
(3)
A 		58
C 64.1
(-3)
A 		100.2
(1)
A 		118.7
(3)
P 		107
(1.7)
P 		55
avr 64.7
(-3) 		83.9
(0.3) 		86.7
(0.8) 		99.3
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 75.1
(-2.4)
A 		52.3
(-3)
P 		91.9
(-2)
P 		95.6
(-1.9)
A 		181.6
(0.3)
P 		286.5
(3)
P 		234
B 93.8
(-2.3)
P 		53.8
(-3)
A 		64.4
(-2.8)
P 		116.5
(-2)
P 		223.2
(-0.2)
P 		412.3
(3)
P 		359
C 101.7
(-2)
M 		53.7
(-3)
A 		108.9
(-1.9)
P 		100.3
(-2)
A 		197.2
(-0.1)
P 		346.4
(3)
P 		293
avr 90.2
(-2.2) 		53.3
(-3) 		88.4
(-2.3) 		104.1
(-2) 		200.7
(-0) 		348.4
(3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 29.5
(3)
P 		12.7
(-2.9)
A 		19.6
(-0.5)
A 		12.3
(-3)
P 		17
B 15.6
(-2.8)
A 		22.9
(3)
A 		15.4
(-3)
P 		22.7
(2.8)
A 		8
C 21.2
(-2.2)
A 		28.8
(-0.2)
A 		41.4
(3)
P 		18
(-3)
P 		23
avr 22.1
(0.4) 		21.5
(-0.1) 		25.5
(3) 		17.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 13.8
(-3)
A 		18.6
(-2.5)
P 		20
(-2.3)
P 		24.2
(-1.9)
A 		54.8
(1.4)
P 		69.8
(3)
P 		56
B 32.6
(-2.3)
P 		17.9
(-2.9)
A 		15.6
(-3)
P 		30.9
(-2.3)
P 		90.7
(0.3)
P 		153.7
(3)
P 		138
C 37.7
(-1.7)
M 		16.4
(-3)
A 		27.7
(-2.3)
P 		20.2
(-2.8)
A 		63.8
(-0.1)
P 		116
(3)
P 		100
avr 28
(-2.3) 		17.6
(-3) 		21.1
(-2.8) 		25.1
(-2.5) 		69.8
(0.3) 		113.2
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21013
Sequence Type Exemplar sequence
Representative Public ID C30435 NCBI
Target Description C30435_rc /REP_DB=TREMBL Accession /GB=C30435 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065819 NCBI Caenorhabditis elegans F54E7.8 (F54E7.8) mRNA, complete cds. 11/11 None
SNAP00000020786 ENSEMBL cdna:SNAP chromosome:CEL140:III:5678011:5678461:-1 11/11 None
GENEFINDER00000020796 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5678011:5678937:-1 11/11 None
F54E7.8 ENSEMBL cdna:known chromosome:CEL140:III:5677902:5678937:-1 gene:F54E7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5678016-5678342(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54E7.8
Entrez Gene 175785 Entrez gene
SwissProt Q9BI86 EMBL-EBI
WormBase CE26898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK20078 Hypothetical protein F54E7.8 [Caenorhabditis elegans] ref|NP_498220.1| F54E7.8 [Caenorhabditis elegans] 1.0E-144
blast CAE64312 Hypothetical protein CBG08990 [Caenorhabditis briggsae] 3.0E-74
blast AAK20078 Hypothetical protein F54E7.8 [Caenorhabditis elegans] ref|NP_498220.1| F54E7.8 [Caenorhabditis elegans] 3.0E-70
blast CAE64312 Hypothetical protein CBG08990 [Caenorhabditis briggsae] 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:174472_AT
tattccggagaccaaaagctacagtcttgatgattctttgataaacggacatgacatatc
aatggtgaatacatccaacgaacgacgaaaactggcttttgatgagttggacgatgaaga
actgcaaactccagcaagaaaaccacaaagaactccatccagagctccagaacggaatcc
tcttgatctattttccctacaagcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCGGAGACCAAAAGCTACAGT 487 655 41 Antisense
AGCTACAGTCTTGATGATTCTTTGA 613 79 57 Antisense
GATTCTTTGATAAACGGACATGACA 554 431 72 Antisense
AACGGACATGACATATCAATGGTGA 329 137 84 Antisense
GAACGACGAAAACTGGCTTTTGATG 473 347 120 Antisense
GAAGAACTGCAAACTCCAGCAAGAA 161 341 156 Antisense
AAAACCACAAAGAACTCCATCCAGA 403 131 179 Antisense
CAAAGAACTCCATCCAGAGCTCCAG 686 191 186 Antisense
GAGCTCCAGAACGGAATCCTCTTGA 308 387 202 Antisense
GGAATCCTCTTGATCTATTTTCCCT 449 533 214 Antisense
TTGATCTATTTTCCCTACAAGCACC 24 707 223 Antisense
Sequence Source Affymetrix Proprietary Database