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[174471_at]

Description C51387_rc /REP_DB=TREMBL Accession /GB=C51387 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk194h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 61      6grp_total > 12      4grp_total > 39      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 586.3
(3)
P 		303.2
(-3)
P 		353.5
(-1.9)
P 		382.3
(-1.3)
P 		283
B 691.4
(3)
P 		453.8
(-1.2)
P 		352.6
(-3)
P 		509.5
(-0.2)
P 		339
C 632.7
(3)
P 		403.4
(-2)
P 		355.6
(-3)
P 		442.6
(-1.1)
P 		277
avr 636.8
(3) 		386.8
(-2.3) 		353.9
(-3) 		444.8
(-1.1) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 412.6
(0.6)
P 		507.6
(3)
P 		463.4
(1.9)
P 		298.6
(-2.2)
P 		428.6
(1)
P 		267.2
(-3)
P 		240
B 655.2
(1.3)
P 		783.9
(3)
P 		577
(0.3)
P 		339.2
(-2.8)
P 		327.6
(-3)
P 		366.2
(-2.5)
P 		456
C 448.8
(0.3)
P 		544.8
(3)
P 		421.4
(-0.4)
P 		429.9
(-0.2)
P 		329.1
(-3)
P 		388.9
(-1.3)
P 		216
avr 505.5
(0.6) 		612.1
(3) 		487.3
(0.2) 		355.9
(-2.7) 		361.8
(-2.5) 		340.8
(-3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 213.5
(3)
P 		65.8
(-2.6)
P 		92.4
(-1.6)
P 		56
(-3)
P 		158
B 220.5
(3)
P 		112.1
(-1.7)
P 		81.7
(-3)
P 		108.6
(-1.8)
P 		139
C 209.4
(3)
P 		116
(-1.2)
P 		123.9
(-0.8)
P 		74.6
(-3)
P 		135
avr 214.5
(3) 		98
(-2.2) 		99.3
(-2.1) 		79.7
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 76.1
(-2.4)
P 		180.5
(3)
P 		100.9
(-1.1)
P 		75.7
(-2.4)
P 		129.3
(0.3)
P 		65.1
(-3)
P 		115
B 228
(1.8)
P 		260.9
(3)
P 		140.1
(-1.2)
P 		89.8
(-3)
P 		133.1
(-1.5)
P 		136.6
(-1.4)
P 		171
C 166.4
(3)
P 		166.2
(3)
P 		107.2
(-1.4)
P 		86.4
(-3)
P 		106.5
(-1.5)
P 		130.2
(0.3)
P 		80
avr 156.8
(0.7) 		202.5
(3) 		116.1
(-1.4) 		84
(-3) 		123
(-1) 		110.6
(-1.7) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21584
Sequence Type Exemplar sequence
Representative Public ID C51387 NCBI
Target Description C51387_rc /REP_DB=TREMBL Accession /GB=C51387 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk194h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067891 NCBI Caenorhabditis elegans Y67D8C.9 (Y67D8C.9) mRNA, complete cds. 11/11 B 
Y67D8C.9 ENSEMBL cdna:known chromosome:CEL140:IV:3077475:3086919:-1 gene:Y67D8C.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001618 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3077539-3077794(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.9
Entrez Gene 177088 Entrez gene
SwissProt Q9GUN3 EMBL-EBI
WormBase CE27507 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4179 membrane alanyl aminopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG23372 Hypothetical protein Y67D8C.9 [Caenorhabditis elegans] ref|NP_500292.1| Y67D8C.9 [Caenorhabditis elegans] 0.0
blast CAE59886 Hypothetical protein CBG03367 [Caenorhabditis briggsae] 0.0
blast EAL26872 GA11295-PA [Drosophila pseudoobscura] 8.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 3.7E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500292.1 1 46-68
Y67D8C.9 1 46-68
Sequence
Target Sequence 
>C. ELEGANS:174471_AT
cagtgtgtcacaaggtgttctacatcagtttttcgccgctgatctctccaatttctgagt
ttttttctctcggaaaacttcactcagtttggctaatttttcactttttgtgcaaaaaaa
atgcgggtattgtttttgaatcgggtctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGTGTCACAAGGTGTTCTACAT 96 209 86 Antisense
GTGTCACAAGGTGTTCTACATCAGT 256 485 90 Antisense
ACAAGGTGTTCTACATCAGTTTTTC 544 113 95 Antisense
ACATCAGTTTTTCGCCGCTGATCTC 314 105 107 Antisense
CGCTGATCTCTCCAATTTCTGAGTT 622 255 122 Antisense
CAATTTCTGAGTTTTTTTCTCTCGG 689 179 134 Antisense
TTTCTCTCGGAAAACTTCACTCAGT 433 669 149 Antisense
ACTTCACTCAGTTTGGCTAATTTTT 297 103 162 Antisense
TCAGTTTGGCTAATTTTTCACTTTT 40 623 169 Antisense
AATGCGGGTATTGTTTTTGAATCGG 542 165 205 Antisense
GTATTGTTTTTGAATCGGGTCTGTC 403 451 212 Antisense
Sequence Source Affymetrix Proprietary Database