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[174470_at]

Description CEC5194_rc /REP_DB=TREMBL Accession /GB=C11519 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk181g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 742
1 2 3 4 range
A 969.2
(3)
P 		659.3
(0.5)
P 		485.9
(-0.9)
P 		227
(-3)
P 		742
B 837.9
(3)
P 		692.3
(1.4)
P 		559.7
(0)
P 		276.2
(-3)
P 		562
C 887.6
(3)
P 		581.8
(-0.1)
P 		566.8
(-0.3)
P 		298.8
(-3)
P 		589
avr 898.2
(3) 		644.5
(0.6) 		537.5
(-0.4) 		267.3
(-3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 823.2
(3)
P 		770
(2.2)
P 		519.5
(-1.4)
P 		412.5
(-3)
P 		644.7
(0.4)
P 		563.1
(-0.8)
P 		411
B 846.2
(3)
P 		702.7
(0.8)
P 		626.1
(-0.3)
P 		634.1
(-0.2)
P 		451.8
(-3)
P 		530.9
(-1.8)
P 		394
C 655.7
(1)
P 		753.6
(3)
P 		530.7
(-1.6)
P 		544.6
(-1.3)
P 		539.4
(-1.5)
P 		465
(-3)
P 		289
avr 775
(3) 		742.1
(2.2) 		558.8
(-2.1) 		530.4
(-2.7) 		545.3
(-2.4) 		519.7
(-3) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 352.9
(3)
P 		143.1
(-0.9)
P 		127
(-1.2)
P 		33.2
(-3)
P 		320
B 267.2
(3)
P 		171
(0.2)
P 		129.7
(-1)
P 		58.9
(-3)
P 		208
C 293.8
(3)
P 		167.3
(-0.1)
P 		197.5
(0.6)
P 		50.4
(-3)
P 		243
avr 304.6
(3) 		160.5
(-0.4) 		151.4
(-0.6) 		47.5
(-3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 151.8
(-1.3)
P 		273.8
(3)
P 		113.1
(-2.7)
P 		104.6
(-3)
P 		194.6
(0.2)
P 		137.1
(-1.8)
P 		169
B 294.5
(3)
P 		233.9
(0.4)
P 		152
(-3)
P 		168
(-2.3)
P 		183.6
(-1.7)
P 		198
(-1.1)
P 		143
C 243
(3)
P 		230
(2.4)
P 		135.1
(-1.8)
P 		109.5
(-3)
P 		174.5
(-0.1)
P 		155.7
(-0.9)
P 		134
avr 229.8
(2.2) 		245.9
(3) 		133.4
(-2.7) 		127.4
(-3) 		184.2
(-0.1) 		163.6
(-1.2) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20120
Sequence Type Exemplar sequence
Representative Public ID CEC5194 NCBI
Target Description CEC5194_rc /REP_DB=TREMBL Accession /GB=C11519 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk181g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026638 NCBI Caenorhabditis elegans Branching AbnorMal family member (bam-2) (bam-2) mRNA, complete cds. 11/11 None
Y71F9AR.1 ENSEMBL cdna:known chromosome:CEL140:I:2949610:2957877:-1 gene:Y71F9AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2949633-2949963(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bam-2
Ensembl Y71F9AR.1
Entrez Gene 171868 Entrez gene
SwissProt Q86S63 EMBL-EBI
WormBase CE33243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21419 Branching abnormal protein 2 [Caenorhabditis elegans] ref|NP_001021809.1| Branching AbnorMal family member (bam-2) [Caenorhabditis elegans] gb|AAQ76550.1| BAM-2 [Caenorhabditis elegans] 0.0
blast CAE60577 Hypothetical protein CBG04211 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021809.1 1 870-892
Y71F9AR.1 1 870-892
Sequence
Target Sequence 
>C. ELEGANS:174470_AT
gggtcccgcgaattcatatttccctgtggcctctgagacctcttcgcctccttgtttttt
ttctaattgatcctcaaaaaaagttgttacggaccggttgtactcccccctatcttcacc
ccggatacatttctttcacgtgccctaggaagatttctaggccacgtggtgccaaaatat
ctcattttattctcagtgtgtgccaaaatgctttccttttctagctccgtttgccttaat
tccagccccccttctaccaaattgtttctattcaaaatgttttaagagttccgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCCCGCGAATTCATATTTCCCT 566 495 14 Antisense
CCGCGAATTCATATTTCCCTGTGGC 280 263 19 Antisense
ATTTCTTTCACGTGCCCTAGGAAGA 455 15 142 Antisense
TTCACGTGCCCTAGGAAGATTTCTA 194 685 148 Antisense
GGAAGATTTCTAGGCCACGTGGTGC 274 531 161 Antisense
GCCACGTGGTGCCAAAATATCTCAT 210 279 174 Antisense
GGTGCCAAAATATCTCATTTTATTC 484 501 181 Antisense
CATTTTATTCTCAGTGTGTGCCAAA 605 215 196 Antisense
AGTGTGTGCCAAAATGCTTTCCTTT 538 59 208 Antisense
CCAAAATGCTTTCCTTTTCTAGCTC 584 275 216 Antisense
TCAAAATGTTTTAAGAGTTCCGCTA 504 627 285 Antisense
Sequence Source Affymetrix Proprietary Database