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[174467_s_at]

Description CEC0583_rc /REP_DB=TREMBL Accession /GB=C11058 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk163a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 24      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 368.3
(-3)
P 		397.8
(-2.3)
P 		536.2
(1)
P 		621.1
(3)
P 		253
B 248.5
(-3)
P 		362.4
(-1.5)
P 		519
(0.5)
P 		710.5
(3)
P 		462
C 321
(-3)
P 		419.1
(-1.3)
P 		546.4
(0.9)
P 		670.2
(3)
P 		349
avr 312.6
(-3) 		393.1
(-1.6) 		533.9
(0.7) 		667.3
(3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 254.9
(-2.6)
P 		246.6
(-2.9)
P 		341.7
(-0.5)
P 		326.5
(-0.8)
P 		240.9
(-3)
P 		479.2
(3)
P 		238
B 283.2
(-2.4)
P 		311.9
(-2)
P 		240.2
(-3)
P 		266.8
(-2.6)
P 		295.5
(-2.2)
P 		653.9
(3)
P 		414
C 241.4
(-3)
P 		245.8
(-2.9)
P 		263.9
(-2.7)
P 		381
(-1.4)
P 		289.6
(-2.4)
P 		760.3
(3)
P 		519
avr 259.8
(-3) 		268.1
(-2.9) 		281.9
(-2.6) 		324.8
(-1.9) 		275.3
(-2.7) 		631.1
(3) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 134.1
(2.3)
P 		86.3
(-3)
P 		140.2
(3)
P 		90.9
(-2.5)
P 		54
B 79.2
(-3)
P 		89.5
(-2.1)
P 		120.3
(0.4)
P 		151.4
(3)
P 		72
C 106.3
(-3)
P 		120.5
(-2)
P 		190.4
(3)
P 		113
(-2.5)
P 		84
avr 106.5
(-2.1) 		98.8
(-3) 		150.3
(3) 		118.4
(-0.7) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 47
(-3)
P 		87.7
(0.5)
P 		74.4
(-0.6)
P 		82.8
(0.1)
P 		72.7
(-0.8)
P 		116.7
(3)
P 		70
B 98.5
(-1.7)
P 		103.8
(-1.5)
P 		58.3
(-3)
P 		70.7
(-2.6)
P 		120
(-1)
P 		243.8
(3)
P 		186
C 89.5
(-2.3)
P 		75
(-2.8)
P 		67.2
(-3)
P 		76.6
(-2.7)
P 		93.7
(-2.2)
P 		254.5
(3)
P 		187
avr 78.3
(-2.5) 		88.8
(-2) 		66.6
(-3) 		76.7
(-2.6) 		95.5
(-1.7) 		205
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174467_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22017
Sequence Type Exemplar sequence
Representative Public ID CEC0583 NCBI
Target Description CEC0583_rc /REP_DB=TREMBL Accession /GB=C11058 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk163a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071477 NCBI Caenorhabditis elegans Y73C8B.3 (Y73C8B.3) mRNA, complete cds. 11/11 A 
SNAP00000021841 ENSEMBL cdna:SNAP chromosome:CEL140:V:3190285:3192957:-1 11/11 None
GENEFINDER00000021851 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3191039:3194828:-1 11/11 None
Y73C8B.3 ENSEMBL cdna:known chromosome:CEL140:V:3191250:3192897:-1 gene:Y73C8B.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3191296-3191684(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8B.3
Entrez Gene 178756 Entrez gene
SwissProt Q9N4E2 EMBL-EBI
WormBase CE24641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-175
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-172
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-170
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 1.0E-167
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-133
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-130
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-128
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174467_S_AT
ctcgttgggaggacaacttgagtttattgaaaagacaaacgatatgaatgtctgattgtt
ttcgccggaaaagatcacctcgtcgaggaggaaattgtttttgagacgctcgagaagcat
gaaggattgcagcattttaacattgacaaagagatctcagaagccgagagactgaaaatc
cttgattcctttacggggactcaacgtggagcttcggttttcgtcgcgcaggacaatcat
tttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTTGGGAGGACAACTTGAGTTT 169 233 13 Antisense
TCGCCGGAAAAGATCACCTCGTCGA 230 599 74 Antisense
GGAAATTGTTTTTGAGACGCTCGAG 327 527 102 Antisense
AGAAGCATGAAGGATTGCAGCATTT 326 73 125 Antisense
GAGATCTCAGAAGCCGAGAGACTGA 356 397 163 Antisense
GCCGAGAGACTGAAAATCCTTGATT 61 285 175 Antisense
TCCTTGATTCCTTTACGGGGACTCA 74 591 191 Antisense
TACGGGGACTCAACGTGGAGCTTCG 459 645 204 Antisense
CAACGTGGAGCTTCGGTTTTCGTCG 497 185 214 Antisense
GTTTTCGTCGCGCAGGACAATCATT 302 447 229 Antisense
GTCGCGCAGGACAATCATTTTCAGA 406 475 235 Antisense
Sequence Source Affymetrix Proprietary Database