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[174466_at]

Description C52737_rc /REP_DB=TREMBL Accession /GB=C52737 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk272c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 94      6grp_total > 78      4grp_total > 50      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 305
(-3)
P 		592.9
(3)
P 		406.3
(-0.9)
P 		359.3
(-1.9)
P 		288
B 296.1
(-0.6)
P 		411.9
(3)
P 		409
(2.9)
P 		220.7
(-3)
P 		191
C 260.4
(-2.1)
P 		465.3
(3)
P 		437.7
(2.3)
P 		223.9
(-3)
P 		241
avr 287.2
(-2.5) 		490
(3) 		417.7
(1) 		268
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 832
1 2 3 4 5 6 range
A 407
(-1.6)
P 		307.9
(-2.6)
P 		274.4
(-3)
P 		305.6
(-2.7)
P 		470.8
(-0.9)
P 		834
(3)
P 		560
B 418.9
(-1.9)
P 		265.4
(-3)
P 		323.9
(-2.6)
P 		330.9
(-2.5)
P 		627.1
(-0.4)
P 		1097.2
(3)
P 		832
C 427.4
(-1.8)
P 		304.9
(-2.8)
P 		278.5
(-3)
P 		309.6
(-2.8)
P 		533.2
(-1)
P 		1031.8
(3)
P 		753
avr 417.8
(-1.9) 		292.7
(-3) 		292.3
(-3) 		315.4
(-2.8) 		543.7
(-0.8) 		987.7
(3) 		695
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 111.1
(1.6)
P 		128.7
(3)
P 		106.2
(1.2)
P 		52.6
(-3)
P 		76
B 94.4
(2.2)
P 		101.7
(3)
P 		94.8
(2.2)
P 		47
(-3)
P 		55
C 86.2
(-0.5)
P 		133.8
(2)
P 		152.5
(3)
P 		37.8
(-3)
P 		115
avr 97.2
(1.1) 		121.4
(3) 		117.8
(2.7) 		45.8
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 75
(-2.4)
P 		109.5
(-0.9)
P 		59.8
(-3)
P 		77.5
(-2.3)
P 		142.1
(0.4)
P 		203
(3)
P 		143
B 145.7
(-1.8)
P 		88.4
(-2.8)
P 		78.6
(-3)
P 		87.6
(-2.8)
P 		254.8
(0.2)
P 		409.1
(3)
P 		331
C 158.4
(-1)
P 		93
(-2.3)
P 		70.9
(-2.8)
P 		62.3
(-3)
P 		172.5
(-0.7)
P 		345.4
(3)
P 		283
avr 126.4
(-1.6) 		97
(-2.3) 		69.8
(-3) 		75.8
(-2.9) 		189.8
(-0.1) 		319.2
(3) 		249
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20112
Sequence Type Exemplar sequence
Representative Public ID C52737 NCBI
Target Description C52737_rc /REP_DB=TREMBL Accession /GB=C52737 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk272c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058555 NCBI Caenorhabditis elegans InCenP homolog family member (icp-1) (icp-1) mRNA, complete cds. 11/11 A 
Y39G10AR.13.2 ENSEMBL cdna:known chromosome:CEL140:I:2304546:2306793:-1 gene:Y39G10AR.13 11/11 None
Y39G10AR.13.1 ENSEMBL cdna:known chromosome:CEL140:I:2304546:2306791:-1 gene:Y39G10AR.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028486 5/11 Cross Hyb Matching Probes None
SNAP00000028451 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2304579-2304922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol icp-1
Ensembl Y39G10AR.13
Entrez Gene 171788 Entrez gene
SwissProt Q9GSQ0 EMBL-EBI
WormBase CE26991 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587814_AT similar to Inner centromere protein cfa
CANINE_2:CFA.5954.1.A1_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24355.1.S1_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24355.1.S1_S_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24365.1.S1_AT similar to Inner centromere protein cfa
CANINE_2:CFAAFFX.24370.1.S1_S_AT similar to Inner centromere protein cfa
CHICKEN:GGA.1251.2.S1_A_AT inner centromere protein antigens 135/155kDa gga
HG-U133A_2:219769_AT inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:219769_AT inner centromere protein antigens 135/155kDa hs
HG-U133A:219769_AT inner centromere protein antigens 135/155kDa hs
HG-FOCUS:219769_AT inner centromere protein antigens 135/155kDa hs
U133_X3P:G9910375_3P_AT inner centromere protein antigens 135/155kDa hs
HG-U95E:88327_AT inner centromere protein antigens 135/155kDa hs
U133_X3P:HS2.384653.1.S1_3P_AT Inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:1566044_AT Inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:1566043_AT Inner centromere protein antigens 135/155kDa hs
HG-U133_PLUS_2:244862_AT Inner centromere protein antigens 135/155kDa hs
HG-U133B:244862_AT Inner centromere protein antigens 135/155kDa hs
HG-U95B:43768_AT Inner centromere protein antigens 135/155kDa hs
HU35KSUBC:RC_AA132545_AT Inner centromere protein antigens 135/155kDa hs
MOUSE430_2:1439436_X_AT inner centromere protein mm
MOUSE430A_2:1439436_X_AT inner centromere protein mm
MOE430A:1439436_X_AT inner centromere protein mm
MOUSE430_2:1441314_AT inner centromere protein mm
MOE430B:1441314_AT inner centromere protein mm
MU11KSUBA:AA139030_S_AT inner centromere protein mm
MU11KSUBA:AA014535_S_AT inner centromere protein mm
MG-U74AV2:93758_AT inner centromere protein mm
MG-U74AV2:104468_AT inner centromere protein mm
MG-U74BV2:164272_AT inner centromere protein mm
MG-U74CV2:167338_I_AT inner centromere protein mm
MG-U74CV2:166306_AT inner centromere protein mm
MG-U74CV2:170509_AT inner centromere protein mm
MOE430A:1423092_AT inner centromere protein mm
MOUSE430A_2:1423092_AT inner centromere protein mm
MOUSE430_2:1423092_AT inner centromere protein mm
MOE430A:1423093_AT inner centromere protein mm
MOUSE430A_2:1423093_AT inner centromere protein mm
MOUSE430_2:1423093_AT inner centromere protein mm
MG-U74BV2:113149_AT Inner centromere protein (Incenp), mRNA mm
MU19KSUBC:TC40529_AT Inner centromere protein (Incenp), mRNA mm
RG-U34B:RC_AA943603_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAE230B:1397539_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAT230_2:1397539_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAE230B:1378669_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAT230_2:1378669_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAE230B:1383292_AT inner centromere protein antigens 135/155kDa (predicted) rn
RAT230_2:1383292_AT inner centromere protein antigens 135/155kDa (predicted) rn
RG-U34B:RC_AI059996_AT Inner centromere protein antigens 135/155kDa (predicted) rn
RG-U34C:RC_AI072139_AT Inner centromere protein antigens 135/155kDa (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_490956 InCenP homolog family member (icp-1) [Caenorhabditis elegans] gb|AAG24400.1| incenp-like protein ICP-1 [Caenorhabditis elegans] gb|AAK39616.1| Incenp homolog protein 1 [Caenorhabditis elegans] 0.0
blast CAE60296 Hypothetical protein CBG03880 [Caenorhabditis briggsae] 1.0E-115
blast CAE67010 Hypothetical protein CBG12411 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR005635 EMBL-EBI Inner centromere protein, ARK binding region 9.3E-35
Sequence
Target Sequence 
>C. ELEGANS:174466_AT
cgcggatcgtcagcagtgtggaaaaagagtccatcaacgttaaacacgtcgtctcgcaca
attcttcaagacatttcggaatgatgttgtaccgaagcagcttacatcgccaggagtcgc
tccagcatgcgacataatcttttttcaaaaattgtaaaatgtttttatatttcgtattga
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCGGATCGTCAGCAGTGTGGAAAA 232 253 81 Antisense
AAAGAGTCCATCAACGTTAAACACG 98 121 104 Antisense
TTAAACACGTCGTCTCGCACAATTC 49 683 120 Antisense
GTCGTCTCGCACAATTCTTCAAGAC 331 473 128 Antisense
GCACAATTCTTCAAGACATTTCGGA 449 317 136 Antisense
GGAATGATGTTGTACCGAAGCAGCT 104 533 158 Antisense
GTACCGAAGCAGCTTACATCGCCAG 263 459 169 Antisense
CGAAGCAGCTTACATCGCCAGGAGT 423 253 173 Antisense
CCAGGAGTCGCTCCAGCATGCGACA 471 271 190 Antisense
AGCATGCGACATAATCTTTTTTCAA 179 79 204 Antisense
AATGTTTTTATATTTCGTATTGAGT 625 161 238 Antisense
Sequence Source Affymetrix Proprietary Database