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[174464_at]

Description C51668_rc /REP_DB=TREMBL Accession /GB=C51668 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk212a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 475.8
(3)
P 		140.5
(-2.9)
P 		133.2
(-3)
P 		387.4
(1.5)
P 		343
B 534.7
(3)
P 		157
(-2.2)
P 		101.6
(-3)
P 		167
(-2.1)
P 		433
C 511.5
(3)
P 		203.1
(-2.2)
P 		156.9
(-3)
P 		216.5
(-2)
P 		355
avr 507.3
(3) 		166.9
(-2.4) 		130.6
(-3) 		257
(-1) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1157
1 2 3 4 5 6 range
A 884.6
(3)
P 		354.8
(-1.8)
P 		295
(-2.4)
P 		227.7
(-3)
P 		253.3
(-2.8)
P 		246.2
(-2.8)
P 		657
B 1326.4
(3)
P 		549.4
(-1.2)
P 		209.5
(-3)
P 		228.4
(-2.9)
P 		282.1
(-2.6)
P 		363.4
(-2.2)
P 		1117
C 804.3
(3)
P 		470.6
(-0.2)
P 		169.2
(-3)
P 		185.7
(-2.8)
P 		205.2
(-2.7)
P 		246.2
(-2.3)
P 		635
avr 1005.1
(3) 		458.3
(-1.1) 		224.6
(-2.9) 		213.9
(-3) 		246.9
(-2.7) 		285.3
(-2.5) 		791
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 173.2
(3)
P 		30.5
(-3)
P 		34.8
(-2.8)
P 		56.7
(-1.9)
P 		143
B 170.5
(3)
P 		38.8
(-2.4)
P 		23.5
(-3)
P 		35.6
(-2.5)
P 		147
C 169.3
(3)
P 		58.4
(-2)
P 		54.7
(-2.2)
P 		36.5
(-3)
P 		133
avr 171
(3) 		42.6
(-2.8) 		37.7
(-3) 		42.9
(-2.8) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 163.1
(3)
P 		126.2
(0.9)
P 		64.2
(-2.6)
P 		57.8
(-3)
P 		76.4
(-1.9)
P 		59.9
(-2.9)
P 		105
B 461.5
(3)
P 		182.9
(-1.1)
P 		50.9
(-3)
P 		60.5
(-2.9)
P 		114.6
(-2.1)
P 		135.5
(-1.8)
P 		411
C 298.1
(3)
P 		143.6
(-0.6)
P 		43.1
(-2.9)
P 		37.3
(-3)
P 		66.4
(-2.3)
P 		82.4
(-2)
P 		261
avr 307.6
(3) 		150.9
(-0.7) 		52.7
(-3) 		51.9
(-3) 		85.8
(-2.2) 		92.6
(-2) 		256
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21726
Sequence Type Exemplar sequence
Representative Public ID C51668 NCBI
Target Description C51668_rc /REP_DB=TREMBL Accession /GB=C51668 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk212a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072657 NCBI Caenorhabditis elegans Y97E10AR.1 (Y97E10AR.1) mRNA, complete cds. 11/11 None
Y97E10AR.1 ENSEMBL cdna:known chromosome:CEL140:V:8004054:8007308:1 gene:Y97E10AR.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8006953-8007231(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.1
Entrez Gene 179174 Entrez gene
SwissProt Q9N2U9 EMBL-EBI
WormBase CE33347 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60915 Hypothetical protein Y97E10AR.1 [Caenorhabditis elegans] ref|NP_505058.2| Y97E10AR.1 [Caenorhabditis elegans] 0.0
blast CAE66164 Hypothetical protein CBG11401 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 0.0060
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:174464_AT
cgttttttcctctgtacaatacctgatagttttttgtatttttttggatgagattacaca
gttgactactactatcttcgtgcaaaagctaccagctccttgtaaatttaaaaatctccc
acaaaatctttcatgaaaccactttccccaaattactttcaattgttttttgtactttat
agatctgatcgttttttcaaattcaagcatttctcaggaatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTTTTTCCTCTGTACAATACCTG 352 245 37 Antisense
TCCTCTGTACAATACCTGATAGTTT 157 593 44 Antisense
GGATGAGATTACACAGTTGACTACT 92 515 82 Antisense
GTTGACTACTACTATCTTCGTGCAA 668 437 97 Antisense
ATCTTCGTGCAAAAGCTACCAGCTC 243 31 110 Antisense
AAAGCTACCAGCTCCTTGTAAATTT 690 119 121 Antisense
TCCCACAAAATCTTTCATGAAACCA 252 597 153 Antisense
TCATGAAACCACTTTCCCCAAATTA 694 605 167 Antisense
GTTTTTTGTACTTTATAGATCTGAT 12 449 201 Antisense
ATAGATCTGATCGTTTTTTCAAATT 218 23 215 Antisense
AATTCAAGCATTTCTCAGGAATCTT 529 175 236 Antisense
Sequence Source Affymetrix Proprietary Database