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[174463_s_at]

Description C36183_rc /REP_DB=TREMBL Accession /GB=C36183 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk455g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 08      6grp_highest_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 141.5
(-1.6)
P 		102.7
(-3)
P 		174.1
(-0.4)
P 		267.4
(3)
P 		165
B 130.9
(-2.3)
P 		112.4
(-3)
P 		141.6
(-1.9)
P 		267.3
(3)
P 		155
C 90.1
(-3)
P 		116.1
(-2.2)
P 		145.6
(-1.3)
P 		281.4
(3)
P 		191
avr 120.8
(-2.6) 		110.4
(-3) 		153.8
(-1.4) 		272
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 108.7
(0.5)
P 		138.5
(3)
P 		66.1
(-3)
P 		83.9
(-1.5)
P 		97.8
(-0.4)
P 		74.3
(-2.3)
P 		72
B 164.6
(3)
P 		107.8
(-0.5)
P 		67.5
(-3)
P 		78.8
(-2.3)
P 		89.4
(-1.6)
P 		100.5
(-1)
P 		97
C 174.1
(3)
P 		104.8
(-0.5)
P 		77.2
(-1.9)
P 		54.6
(-3)
P 		83.1
(-1.6)
P 		73.7
(-2)
P 		120
avr 149.1
(3) 		117
(0.6) 		70.3
(-3) 		72.4
(-2.8) 		90.1
(-1.5) 		82.8
(-2) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 51.5
(3)
P 		22.3
(-3)
P 		45.5
(1.8)
P 		39.1
(0.5)
P 		29
B 41.7
(-0.1)
P 		27.8
(-3)
P 		32.8
(-2)
P 		57
(3)
P 		29
C 29.8
(-3)
P 		33.4
(-2)
P 		50.8
(3)
P 		47.5
(2.1)
P 		21
avr 41
(0.9) 		27.8
(-3) 		43
(1.5) 		47.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 20
(-2)
P 		49.2
(3)
P 		14.4
(-3)
P 		21.3
(-1.8)
P 		29.5
(-0.4)
P 		18.1
(-2.4)
P 		35
B 57.3
(3)
P 		35.9
(-0.1)
P 		16.4
(-3)
P 		20.9
(-2.3)
P 		36.3
(-0.1)
P 		37.5
(0.1)
P 		41
C 64.5
(3)
P 		32
(-0.6)
P 		19.7
(-2)
P 		11
(-3)
P 		26.9
(-1.2)
P 		24.7
(-1.5)
P 		54
avr 47.3
(3) 		39
(1.4) 		16.8
(-3) 		17.7
(-2.8) 		30.9
(-0.2) 		26.8
(-1) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174463_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20083
Sequence Type Exemplar sequence
Representative Public ID C36183 NCBI
Target Description C36183_rc /REP_DB=TREMBL Accession /GB=C36183 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk455g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026650 NCBI Caenorhabditis elegans Y71G12B.23a (Y71G12B.23) mRNA, complete cds. 11/11 None
SNAP00000001779 ENSEMBL cdna:SNAP chromosome:CEL140:I:1670209:1676431:-1 11/11 None
GENEFINDER00000001823 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1670209:1672710:-1 11/11 None
Y71G12B.23a ENSEMBL cdna:known chromosome:CEL140:I:1670093:1676431:-1 gene:Y71G12B.23 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026651 3/11 Cross Hyb Matching Probes None
Y71G12B.23b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171731 2 1 NM_001026650 173726_s_at (10), 174463_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1670102-1671081(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71G12B.23
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73924 Hypothetical protein Y71G12B.23a [Caenorhabditis elegans] ref|NP_001021821.1| Y71G12B.23a [Caenorhabditis elegans] 0.0
blast AAT81183 Hypothetical protein Y71G12B.23b [Caenorhabditis elegans] ref|NP_001021822.1| Y71G12B.23b [Caenorhabditis elegans] 0.0
blast CAE74414 Hypothetical protein CBG22146 [Caenorhabditis briggsae] 0.0
blast AAK73924 Hypothetical protein Y71G12B.23a [Caenorhabditis elegans] ref|NP_001021821.1| Y71G12B.23a [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.3E-24
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.3E-24
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021821.1 7 380-402,412-434,447-469,484-501,508-527,537-559,561-583
Y71G12B.23a 7 380-402,412-434,447-469,484-501,508-527,537-559,561-583
SNAP00000001779 7 372-394,404-426,439-461,476-493,500-519,529-551,553-575
GENEFINDER00000001823 7 39-61,71-93,106-128,143-160,167-186,196-218,220-242
Sequence
Target Sequence 
>C. ELEGANS:174463_S_AT
gggcggtatgatgtatgccgtcggcgtgtttttcttcaaattggacggaattgtcgcgtt
tgcgcacgcgatttggcatctttttgtgcctcctgccacacgtacgccgtctacgctttt
ctcttaggccccgacaagaacaatccggtgccagatattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCGGTATGATGTATGCCGTCGGC 96 493 30 Antisense
GATGTATGCCGTCGGCGTGTTTTTC 592 409 39 Antisense
TCGGCGTGTTTTTCTTCAAATTGGA 198 603 50 Antisense
TGTTTTTCTTCAAATTGGACGGAAT 478 557 56 Antisense
TGGACGGAATTGTCGCGTTTGCGCA 381 547 71 Antisense
GAATTGTCGCGTTTGCGCACGCGAT 456 323 77 Antisense
GTTTGCGCACGCGATTTGGCATCTT 641 451 87 Antisense
CACGCGATTTGGCATCTTTTTGTGC 33 201 94 Antisense
TTTCTCTTAGGCCCCGACAAGAACA 444 669 147 Antisense
GGCCCCGACAAGAACAATCCGGTGC 87 541 156 Antisense
AGAACAATCCGGTGCCAGATATTTA 340 73 166 Antisense
Sequence Source Affymetrix Proprietary Database