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[174462_at]

Description CEK002D8R_rc /REP_DB=TREMBL Accession /GB=D27684 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk2d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 20      6grp_total > 28      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 915
1 2 3 4 range
A 1490.1
(2.7)
P 		1516.4
(3)
P 		1131.1
(-0.8)
P 		906.2
(-3)
P 		610
B 1423.3
(3)
P 		1261
(0.8)
P 		1246.6
(0.6)
P 		982.3
(-3)
P 		441
C 1679.5
(3)
P 		1166.4
(-0.4)
P 		1196.2
(-0.2)
P 		764.5
(-3)
P 		915
avr 1531
(3) 		1314.6
(1) 		1191.3
(-0.2) 		884.3
(-3) 		647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1208
1 2 3 4 5 6 range
A 1337.1
(3)
P 		1066.4
(1)
P 		769.2
(-1.1)
P 		515.4
(-3)
P 		1061.6
(1)
P 		647.4
(-2)
P 		822
B 1514.3
(3)
P 		1028.8
(-0)
P 		551.3
(-3)
P 		756.2
(-1.7)
P 		887.1
(-0.9)
P 		1035.2
(0)
P 		963
C 1723.5
(3)
P 		798.1
(-2.3)
P 		683.1
(-3)
P 		843.1
(-2.1)
P 		871.8
(-1.9)
P 		927.9
(-1.6)
P 		1040
avr 1525
(3) 		964.4
(-0.9) 		667.9
(-3) 		704.9
(-2.7) 		940.2
(-1.1) 		870.2
(-1.6) 		857
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 542.5
(3)
P 		329.2
(-0.1)
P 		295.7
(-0.6)
P 		132.6
(-3)
P 		410
B 453.9
(3)
P 		311.4
(-0.5)
P 		288.9
(-1)
P 		209.3
(-3)
P 		245
C 556
(3)
P 		335.3
(-0.1)
P 		416.9
(1)
P 		128.9
(-3)
P 		427
avr 517.5
(3) 		325.3
(-0.2) 		333.8
(-0.1) 		156.9
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 508
1 2 3 4 5 6 range
A 246.5
(-0.2)
P 		379.3
(3)
P 		167.5
(-2.1)
P 		130.7
(-3)
P 		320.3
(1.6)
P 		157.6
(-2.4)
P 		249
B 526.9
(3)
P 		342.5
(0.2)
P 		133.9
(-3)
P 		200.3
(-2)
P 		360.4
(0.5)
P 		386
(0.8)
P 		393
C 638.8
(3)
P 		243.5
(-2.1)
P 		173.9
(-2.9)
P 		169.5
(-3)
P 		282.1
(-1.6)
P 		310.6
(-1.2)
P 		469
avr 470.7
(3) 		321.8
(0.1) 		158.4
(-3) 		166.8
(-2.8) 		320.9
(0.1) 		284.7
(-0.6) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20320
Sequence Type Exemplar sequence
Representative Public ID CEK002D8R NCBI
Target Description CEK002D8R_rc /REP_DB=TREMBL Accession /GB=D27684 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk2d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058967 NCBI Caenorhabditis elegans C41D11.3 (C41D11.3) mRNA, complete cds. 11/11 None
C41D11.3 ENSEMBL cdna:known chromosome:CEL140:I:4428467:4431917:-1 gene:C41D11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4428476-4428857(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41D11.3
Entrez Gene 3565087 Entrez gene
SwissProt O01972 EMBL-EBI
WormBase CE08660 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U133_PLUS_2:220462_AT TGF-beta induced apotosis protein 2 hs
HG-U133A:220462_AT TGF-beta induced apotosis protein 2 hs
HG-U133A_2:220462_AT TGF-beta induced apotosis protein 2 hs
U133_X3P:G13376463_3P_AT TGF-beta induced apotosis protein 2 hs
HG-U95D:80390_AT TGF-beta induced apotosis protein 2 hs
MOE430B:1453538_AT RIKEN cDNA A330102K23 gene mm
MOUSE430_2:1453538_AT RIKEN cDNA A330102K23 gene mm
MOE430B:1456336_AT RIKEN cDNA A330102K23 gene mm
MOUSE430_2:1456336_AT RIKEN cDNA A330102K23 gene mm
MG-U74CV2:135913_AT RIKEN cDNA A330102K23 gene (A330102K23Rik), mRNA mm
MOE430B:1444304_AT RIKEN cDNA A330102K23 gene (A330102K23Rik), mRNA mm
MOUSE430_2:1444304_AT RIKEN cDNA A330102K23 gene (A330102K23Rik), mRNA mm
MOUSE430_2:1455516_AT RIKEN cDNA A330102K23 gene (A330102K23Rik), mRNA mm
MOE430B:1455516_AT RIKEN cDNA A330102K23 gene (A330102K23Rik), mRNA mm
RAE230B:1385044_AT similar to TGF-beta induced apotosis protein 2 (predicted) rn
RAT230_2:1385044_AT similar to TGF-beta induced apotosis protein 2 (predicted) rn
RAE230B:1378393_AT Similar to TGF-beta induced apotosis protein 2 (predicted) rn
RAT230_2:1378393_AT Similar to TGF-beta induced apotosis protein 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAM15561 Hypothetical protein C41D11.3 [Caenorhabditis elegans] ref|NP_491368.1| C41D11.3 [Caenorhabditis elegans] 0.0
blast CAE60403 Hypothetical protein CBG04005 [Caenorhabditis briggsae] 1.0E-145
blast XP_343505 PREDICTED: similar to TGF-beta induced apoptosis protein 3 [Rattus norvegicus] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:174462_AT
attctaattattttctgccacctgaatgtaaactattacaataatcatcgtcatcataaa
ttgtcattctcttaaatcgcccctcatccagtatacacataaggtctcaggaaacaaaat
atcgtgttttttttctctgtaaaatttaatgcattacggaaacacccatacaattaacgg
acccttttctctctctcttgatcggtttttttttcgctctgtaatacaacattttttgtt
gtaattttccacaatttcgccaatctttgatttattttcgtgttttttttgtaactttag
aattttcatgccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTAATTATTTTCTGCCACCTGA 200 11 39 Antisense
CTGCCACCTGAATGTAAACTATTAC 211 237 53 Antisense
ATCATCGTCATCATAAATTGTCATT 72 31 82 Antisense
AATTGTCATTCTCTTAAATCGCCCC 652 177 97 Antisense
CCCCTCATCCAGTATACACATAAGG 335 261 118 Antisense
CAAAATATCGTGTTTTTTTTCTCTG 180 191 153 Antisense
GCATTACGGAAACACCCATACAATT 434 209 189 Antisense
TGATCGGTTTTTTTTTCGCTCTGTA 533 563 237 Antisense
TTTTCCACAATTTCGCCAATCTTTG 176 677 283 Antisense
CCAATCTTTGATTTATTTTCGTGTT 54 277 298 Antisense
GTAACTTTAGAATTTTCATGCCCTT 227 461 329 Antisense
Sequence Source Affymetrix Proprietary Database