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[174460_at]

Description C36465_rc /REP_DB=TREMBL Accession /GB=C36465 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk457f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 39      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 776.4
(3)
P 		402.9
(-2.4)
P 		358.2
(-3)
P 		566.6
(-0)
P 		418
B 794.8
(3)
P 		434.9
(-3)
P 		458.8
(-2.6)
P 		568.3
(-0.8)
P 		360
C 715.3
(3)
P 		465.5
(-1.3)
P 		365.9
(-3)
P 		481.6
(-1)
P 		349
avr 762.2
(3) 		434.4
(-2.3) 		394.3
(-3) 		538.8
(-0.6) 		368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 653.1
(0.8)
P 		827.9
(3)
P 		483.5
(-1.4)
P 		557.9
(-0.5)
P 		668.3
(1)
P 		358.4
(-3)
P 		470
B 631.5
(0.4)
P 		864.9
(3)
P 		703.3
(1.2)
P 		674.8
(0.9)
P 		530
(-0.7)
P 		315.9
(-3)
P 		549
C 603.4
(0.9)
P 		759.8
(3)
P 		625.8
(1.2)
P 		614.8
(1.1)
P 		520.2
(-0.2)
P 		305.4
(-3)
P 		454
avr 629.3
(0.7) 		817.5
(3) 		604.2
(0.4) 		615.8
(0.5) 		572.8
(0) 		326.6
(-3) 		491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 282.7
(3)
P 		87.5
(-2.9)
P 		93.6
(-2.7)
P 		82.9
(-3)
P 		200
B 253.5
(3)
P 		107.4
(-3)
P 		106.3
(-3)
P 		121.1
(-2.4)
P 		147
C 236.8
(3)
P 		133.8
(-1)
P 		127.5
(-1.2)
P 		81.2
(-3)
P 		156
avr 257.7
(3) 		109.6
(-2.5) 		109.1
(-2.5) 		95.1
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 120.4
(-2)
P 		294.4
(3)
P 		105.3
(-2.5)
P 		141.5
(-1.4)
P 		201.7
(0.3)
P 		87.3
(-3)
P 		207
B 219.7
(0.6)
P 		287.9
(3)
P 		170.8
(-1.1)
P 		178.7
(-0.9)
P 		215.3
(0.4)
P 		117.8
(-3)
P 		170
C 223.7
(2.6)
P 		231.9
(3)
P 		159.3
(-0.4)
P 		123.6
(-2)
P 		168.3
(0.1)
P 		102.2
(-3)
P 		130
avr 187.9
(0) 		271.4
(3) 		145.1
(-1.5) 		147.9
(-1.4) 		195.1
(0.3) 		102.4
(-3) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21510
Sequence Type Exemplar sequence
Representative Public ID C36465 NCBI
Target Description C36465_rc /REP_DB=TREMBL Accession /GB=C36465 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk457f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171323 NCBI Caenorhabditis elegans F19C7.8b (F19C7.8) mRNA, complete cds. 11/11 A 
F19C7.8b ENSEMBL cdna:known chromosome:CEL140:IV:4610572:4618781:-1 gene:F19C7.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171322 1/11 Cross Hyb Matching Probes A 
SNAP00000030501 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030509 1/11 Cross Hyb Matching Probes None
F19C7.8a 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177226 2 1 NM_171322 178883_at (11)
NM_171323 174460_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4610648-4610927(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19C7.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98033 Hypothetical protein F19C7.8b [Caenorhabditis elegans] ref|NP_741381.1| F19C7.8b [Caenorhabditis elegans] 1.0E-162
blast AAM98032 Hypothetical protein F19C7.8a [Caenorhabditis elegans] ref|NP_741380.1| F19C7.8a [Caenorhabditis elegans] 1.0E-146
blast CAE58554 Hypothetical protein CBG01713 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:174460_AT
ccactcagttatcttgccttaatctgattctcacctggtttatcccatctctctgatttc
ctacgagtacccctacccatatttgtcgccttcgttttttttagctagtttcagcctcac
cctccaaaagaataattccccccaaaaaatctcataaacctaaccaaatttgtaattcaa
tcagcatatatgttgtcatatcggtcaccatttgaccatttctggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTCAGTTATCTTGCCTTAATCT 632 273 16 Antisense
CTTGCCTTAATCTGATTCTCACCTG 513 217 28 Antisense
TCTGATTCTCACCTGGTTTATCCCA 400 607 38 Antisense
CCATCTCTCTGATTTCCTACGAGTA 436 271 60 Antisense
CTCTCTGATTTCCTACGAGTACCCC 269 231 64 Antisense
TTTTTAGCTAGTTTCAGCCTCACCC 530 673 113 Antisense
CAGCCTCACCCTCCAAAAGAATAAT 371 203 127 Antisense
ATCTCATAAACCTAACCAAATTTGT 6 19 164 Antisense
ATTCAATCAGCATATATGTTGTCAT 171 13 190 Antisense
TATGTTGTCATATCGGTCACCATTT 45 657 204 Antisense
GTCACCATTTGACCATTTCTGGAAA 624 465 219 Antisense
Sequence Source Affymetrix Proprietary Database