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[174458_at]

Description C31080_rc /REP_DB=TREMBL Accession /GB=C31080 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk268f11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 76      6grp_total > 04      4grp_total > 25      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 870
1 2 3 4 range
A 821.4
(-3)
P 		1116
(3)
P 		870.3
(-2)
P 		881.3
(-1.8)
P 		295
B 850.2
(-2.9)
P 		943.8
(-2.1)
P 		844.4
(-3)
P 		1523.7
(3)
P 		679
C 653.9
(-3)
P 		861.9
(0.8)
P 		981.3
(3)
P 		749.9
(-1.2)
P 		327
avr 775.2
(-3) 		973.9
(1.3) 		898.7
(-0.3) 		1051.6
(3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 1119.2
(0.1)
P 		1078.2
(-0.3)
P 		845.8
(-2.5)
P 		797.5
(-3)
P 		1426.1
(3)
P 		935.1
(-1.7)
P 		629
B 1347.5
(2.1)
P 		1369
(2.4)
P 		1238.8
(0.9)
P 		1426.2
(3)
P 		887.9
(-3)
P 		1030.5
(-1.4)
P 		538
C 1401.6
(3)
P 		1365.7
(2.6)
P 		935.1
(-1.7)
P 		996.7
(-1.1)
P 		979.9
(-1.3)
P 		808.2
(-3)
P 		593
avr 1289.4
(3) 		1271
(2.7) 		1006.6
(-1.7) 		1073.5
(-0.6) 		1098
(-0.1) 		924.6
(-3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 299.1
(3)
P 		242.2
(1)
P 		227.5
(0.5)
P 		129
(-3)
P 		170
B 271.1
(0.5)
P 		233.1
(-1.3)
P 		195.7
(-3)
P 		324.7
(3)
P 		129
C 216.5
(-0.5)
P 		247.8
(0.4)
P 		342
(3)
P 		126.5
(-3)
P 		216
avr 262.2
(3) 		241
(1.2) 		255.1
(2.4) 		193.4
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 206.3
(-2.5)
P 		383.5
(1.9)
P 		184.2
(-3)
P 		202.3
(-2.6)
P 		430.3
(3)
P 		227.7
(-1.9)
P 		246
B 468.9
(3)
P 		455.7
(2.5)
P 		300.8
(-3)
P 		377.7
(-0.3)
P 		360.7
(-0.9)
P 		384.3
(-0)
P 		168
C 519.5
(3)
P 		416.7
(1.1)
P 		238
(-2.3)
P 		200.4
(-3)
P 		317.1
(-0.8)
P 		270.5
(-1.7)
P 		319
avr 398.2
(2.3) 		418.6
(3) 		241
(-3) 		260.1
(-2.4) 		369.4
(1.3) 		294.2
(-1.2) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21956
Sequence Type Exemplar sequence
Representative Public ID C31080 NCBI
Target Description C31080_rc /REP_DB=TREMBL Accession /GB=C31080 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk268f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C31080
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C31080 C31080_rc /REP_DB=TREMBL Accession /GB=C31080 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk268f11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4516842-4517059(-) 85.71 100.0
Sequence
Target Sequence 
>C. ELEGANS:174458_AT
caaatccaatacacccgatctcatagtttccagaagaagttccaaaaaatattttgagat
ttccgtcccccccacgcaaacacacacacacataaaaccaaacccgttatattcctgtga
taagcatcaacacatcatcctcagaaaacgttttctttcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCCAATACACCCGATCTCATA 664 191 32 Antisense
AATACACCCGATCTCATAGTTTCCA 313 171 39 Antisense
CACCCGATCTCATAGTTTCCAGAAG 348 201 43 Antisense
GATCTCATAGTTTCCAGAAGAAGTT 512 419 48 Antisense
AACACACACACACATAAAACCAAAC 341 135 110 Antisense
CAAACCCGTTATATTCCTGTGATAA 589 189 130 Antisense
ACCCGTTATATTCCTGTGATAAGCA 144 91 133 Antisense
TAAGCATCAACACATCATCCTCAGA 393 637 152 Antisense
GCATCAACACATCATCCTCAGAAAA 371 309 155 Antisense
CACATCATCCTCAGAAAACGTTTTC 107 195 162 Antisense
TCCTCAGAAAACGTTTTCTTTCCTG 196 593 169 Antisense
Sequence Source Affymetrix Proprietary Database