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[174457_at]

Description C55213_rc /REP_DB=TREMBL Accession /GB=C55213 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk350d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_high_8_8 > 34      6grp_highest_nonorm > 70      6grp_total > 29      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 275.2
(3)
P 		173.2
(-0.3)
P 		208.9
(0.8)
A 		92
(-3)
P 		183
B 279
(3)
P 		236.8
(-0.2)
P 		221.7
(-1.3)
M 		199.3
(-3)
P 		80
C 279.7
(3)
P 		178.7
(-0.9)
A 		153.3
(-1.9)
P 		124.2
(-3)
P 		156
avr 278
(3) 		196.2
(-0.5) 		194.6
(-0.6) 		138.5
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 271.9
(0.2)
P 		273.9
(0.3)
P 		217.5
(-3)
P 		245.9
(-1.3)
P 		320.7
(3)
P 		241
(-1.6)
P 		103
B 327.2
(1.3)
P 		381
(3)
P 		233.1
(-1.7)
P 		222.6
(-2)
P 		291.5
(0.2)
P 		190.4
(-3)
P 		191
C 400.5
(3)
P 		309.1
(0.2)
P 		295.5
(-0.3)
P 		211.5
(-2.9)
P 		388.5
(2.6)
P 		207.8
(-3)
P 		193
avr 333.2
(3) 		321.3
(2.4) 		248.7
(-1.2) 		226.7
(-2.3) 		333.6
(3) 		213.1
(-3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 100.2
(3)
P 		37.6
(-1.3)
P 		54.6
(-0.2)
A 		13.5
(-3)
P 		87
B 89
(3)
P 		58.5
(-0.9)
P 		51.4
(-1.9)
M 		42.5
(-3)
P 		47
C 92.6
(3)
P 		51.4
(-0.4)
A 		53.4
(-0.3)
P 		20.9
(-3)
P 		72
avr 93.9
(3) 		49.2
(-0.9) 		53.1
(-0.6) 		25.6
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 50.1
(-2.7)
P 		97.4
(3)
P 		47.4
(-3)
P 		62.4
(-1.2)
P 		96.8
(2.9)
P 		58.7
(-1.6)
P 		50
B 113.8
(1.9)
P 		126.8
(3)
P 		56.6
(-3)
P 		59
(-2.8)
P 		118.4
(2.3)
P 		71
(-1.8)
P 		70
C 148.4
(3)
P 		94.3
(-0.1)
P 		75.2
(-1.1)
P 		42.5
(-3)
P 		125.7
(1.7)
P 		69.5
(-1.5)
P 		106
avr 104.1
(2) 		106.2
(2.2) 		59.7
(-2.5) 		54.6
(-3) 		113.6
(3) 		66.4
(-1.8) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20484
Sequence Type Exemplar sequence
Representative Public ID C55213 NCBI
Target Description C55213_rc /REP_DB=TREMBL Accession /GB=C55213 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk350d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F35H8.5 ENSEMBL cdna:known chromosome:CEL140:II:9575882:9581437:1 gene:F35H8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9581146-9581387(+) 100.0 100.0
Public Domain and Genome References
Ensembl F35H8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85327 Hypothetical protein F35H8.5 [Caenorhabditis elegans] ref|NP_496057.1| F35H8.5 [Caenorhabditis elegans] 0.0
blast CAE57899 Hypothetical protein CBG00948 [Caenorhabditis briggsae] 0.0
blast XP_394166 PREDICTED: similar to ENSANGP00000005999 [Apis mellifera] 5.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-25
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-19
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.6E-21
Sequence
Target Sequence 
>C. ELEGANS:174457_AT
catcccctttcatgagcaactgtgagcaaaaccaatcgaattccggtaacgaaataagcc
acgccccttgagaataatgagcttctgcccacccctgtcccaaaaccttgaatcagcttt
aacatcttcaaaacttttatcaattttacctaaaatatgccaaatcctccgtcacttttc
agtatttcgtacagttttctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCCCTTTCATGAGCAACTGTGA 610 209 20 Antisense
GAGCAACTGTGAGCAAAACCAATCG 169 391 33 Antisense
GAGCAAAACCAATCGAATTCCGGTA 223 391 43 Antisense
AAGCCACGCCCCTTGAGAATAATGA 561 147 75 Antisense
TGAGAATAATGAGCTTCTGCCCACC 477 569 88 Antisense
CCCCTGTCCCAAAACCTTGAATCAG 100 261 111 Antisense
AACCTTGAATCAGCTTTAACATCTT 177 147 123 Antisense
GAATCAGCTTTAACATCTTCAAAAC 567 327 129 Antisense
TAAAATATGCCAAATCCTCCGTCAC 552 639 170 Antisense
CCTCCGTCACTTTTCAGTATTTCGT 359 267 185 Antisense
CAGTATTTCGTACAGTTTTCTGATT 167 207 199 Antisense
Sequence Source Affymetrix Proprietary Database