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[174455_s_at]

Description C51694_rc /REP_DB=TREMBL Accession /GB=C51694 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk212d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 74      6grp_total > 56      4grp_total > 31      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 763.9
(3)
P 		415.1
(-2)
P 		342.7
(-3)
P 		504
(-0.7)
P 		421
B 812.1
(3)
P 		449.2
(-3)
P 		457.3
(-2.9)
P 		651.4
(0.3)
P 		363
C 818.5
(3)
P 		265.2
(-3)
P 		403.6
(-1.5)
P 		596.5
(0.6)
P 		553
avr 798.2
(3) 		376.5
(-3) 		401.2
(-2.6) 		584
(-0) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 577
(-2.9)
P 		806.7
(2.2)
P 		719.5
(0.3)
P 		606.2
(-2.2)
P 		570.8
(-3)
P 		840.5
(3)
P 		270
B 541.5
(-3)
P 		718.1
(0.2)
P 		780.4
(1.3)
P 		744.2
(0.7)
P 		602.4
(-1.9)
P 		871.5
(3)
P 		330
C 748.3
(1.1)
P 		755.2
(1.2)
P 		659.2
(-0.6)
P 		594
(-1.9)
P 		537.2
(-3)
P 		848.4
(3)
P 		311
avr 622.3
(-1.9) 		760
(1) 		719.7
(0.2) 		648.1
(-1.3) 		570.1
(-3) 		853.5
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 278.1
(3)
P 		90.1
(-2.5)
P 		89.6
(-2.5)
P 		73.8
(-3)
P 		204
B 259
(3)
P 		110.9
(-2.8)
P 		106
(-3)
P 		138.8
(-1.7)
P 		153
C 270.9
(3)
P 		76.2
(-3)
P 		140.7
(-1)
P 		100.6
(-2.2)
P 		195
avr 269.3
(3) 		92.4
(-3) 		112.1
(-2.3) 		104.4
(-2.6) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 106.4
(-3)
P 		286.9
(3)
P 		156.7
(-1.3)
P 		153.7
(-1.4)
P 		172.3
(-0.8)
P 		204.6
(0.3)
P 		181
B 188.4
(-3)
P 		239
(-0.8)
P 		189.5
(-3)
P 		197.1
(-2.6)
P 		244.8
(-0.5)
P 		325
(3)
P 		137
C 277.4
(2.8)
P 		230.4
(1)
P 		167.8
(-1.2)
P 		119.5
(-3)
P 		173.8
(-1)
P 		284
(3)
P 		165
avr 190.7
(-1.2) 		252.1
(2) 		171.3
(-2.2) 		156.8
(-3) 		197
(-0.9) 		271.2
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174455_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20165
Sequence Type Exemplar sequence
Representative Public ID C51694 NCBI
Target Description C51694_rc /REP_DB=TREMBL Accession /GB=C51694 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk212d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059282(11), NM_059281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059282 NCBI Caenorhabditis elegans MTK1/MEKK4 homolog family member (mtk-1) (mtk-1) mRNA, complete cds. 11/11 A 
NM_059281 NCBI Caenorhabditis elegans MTK1/MEKK4 homolog family member (mtk-1) (mtk-1) mRNA, complete cds. 11/11 A 
SNAP00000011714 ENSEMBL cdna:SNAP chromosome:CEL140:I:5803700:5809422:-1 11/11 None
GENEFINDER00000011727 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5803700:5809422:-1 11/11 None
B0414.7a ENSEMBL cdna:known chromosome:CEL140:I:5803544:5809422:-1 gene:B0414.7 11/11 A 
B0414.7b ENSEMBL cdna:known chromosome:CEL140:I:5803608:5809422:-1 gene:B0414.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5803617-5803947(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0414.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB57718 Mtk1/mekk4 homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_491683.1| MTK1/MEKK4 homolog family member (mtk-1) [Caenorhabditis elegans] 0.0
blast AAK68678 Mtk1/mekk4 homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_491682.1| MTK1/MEKK4 homolog family member (mtk-1) [Caenorhabditis elegans] 0.0
blast CAE60453 Hypothetical protein CBG04061 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-53
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-53
hanks 2.2.4 CaMK Group; CaMK II KIN1/SNF1/Nim1; p78 4.0E-25
hanks 2.2.4 CaMK Group; CaMK II KIN1/SNF1/Nim1; p78 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.5E-69
Pfam IPR000719 EMBL-EBI Protein kinase 8.5E-69
Sequence
Target Sequence 
>C. ELEGANS:174455_S_AT
atattgccgacaaaagaccagatgttaaacgattcttcgataattgctttgaatttcttc
caaatgatcggcctacagctgcggaacttcttcaaactacgtttgcaaatgttaatataa
cgtttcaggacgaaaatcatatcccggactatcaatcacaatcttcaaaggacaaatcgt
caccaagctcgttttttctagtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTGCCGACAAAAGACCAGATGT 255 19 13 Antisense
GACCAGATGTTAAACGATTCTTCGA 380 383 28 Antisense
TCGATAATTGCTTTGAATTTCTTCC 55 603 49 Antisense
ATTTCTTCCAAATGATCGGCCTACA 169 17 65 Antisense
TCCAAATGATCGGCCTACAGCTGCG 595 587 71 Antisense
TACAGCTGCGGAACTTCTTCAAACT 451 643 86 Antisense
GCGGAACTTCTTCAAACTACGTTTG 321 239 93 Antisense
GACGAAAATCATATCCCGGACTATC 2 381 141 Antisense
CCGGACTATCAATCACAATCTTCAA 597 265 156 Antisense
AGGACAAATCGTCACCAAGCTCGTT 492 55 181 Antisense
CACCAAGCTCGTTTTTTCTAGTCTA 115 203 193 Antisense
Sequence Source Affymetrix Proprietary Database