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[174454_s_at]

Description C37944_rc /REP_DB=TREMBL Accession /GB=C37944 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk483e11 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 44.3
(3)
A 		12.3
(-3)
A 		12.7
(-2.9)
A 		38.3
(1.9)
A 		32
B 49.4
(3)
A 		11
(-3)
A 		34.6
(0.7)
A 		49.2
(3)
A 		38
C 5.7
(-3)
A 		19.2
(-0.7)
A 		26.5
(0.6)
A 		40.3
(3)
A 		35
avr 33.1
(1) 		14.2
(-3) 		24.6
(-0.8) 		42.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 13.5
(-2.3)
A 		22
(-1.3)
A 		7.2
(-3)
A 		27.5
(-0.7)
A 		54.3
(2.3)
A 		60.3
(3)
A 		53
B 36.2
(-0)
A 		28.2
(-1)
A 		12.8
(-3)
A 		34.5
(-0.2)
A 		15.9
(-2.6)
A 		59.9
(3)
A 		47
C 8.8
(-2.9)
A 		12.4
(-1.9)
A 		28.8
(2.9)
A 		8.5
(-3)
A 		9.7
(-2.7)
A 		29.3
(3)
A 		21
avr 19.5
(-2.4) 		20.9
(-2.2) 		16.3
(-3) 		23.5
(-1.7) 		26.6
(-1.2) 		49.8
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16.1
(3)
A 		2.7
(-3)
A 		3.3
(-2.7)
A 		5.6
(-1.7)
A 		13
B 15.7
(3)
A 		2.7
(-3)
A 		8
(-0.6)
A 		10.5
(0.6)
A 		13
C 1.9
(-3)
A 		5.5
(-0)
A 		9.2
(3)
A 		6.8
(1)
A 		7
avr 11.2
(3) 		3.6
(-3) 		6.8
(-0.5) 		7.6
(0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.5
(-2.6)
A 		7.8
(-0.5)
A 		1.6
(-3)
A 		7
(-0.8)
A 		16.4
(3)
A 		14.7
(2.3)
A 		15
B 12.6
(-0)
A 		9.4
(-1)
A 		3.1
(-3)
A 		9.1
(-1.1)
A 		6.5
(-1.9)
A 		22.4
(3)
A 		19
C 3.3
(-1.8)
A 		3.8
(-1.4)
A 		7.3
(1.1)
A 		1.7
(-3)
A 		3.1
(-2)
A 		9.8
(3)
A 		8
avr 6.1
(-1.9) 		7
(-1.4) 		4
(-3) 		5.9
(-2) 		8.7
(-0.6) 		15.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174454_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21566
Sequence Type Exemplar sequence
Representative Public ID C37944 NCBI
Target Description C37944_rc /REP_DB=TREMBL Accession /GB=C37944 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk483e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067864(11), NM_067863(11), NM_001028319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067864 NCBI Caenorhabditis elegans Y54G2A.17b (Y54G2A.17) mRNA, complete cds. 11/11 A 
NM_067863 NCBI Caenorhabditis elegans Y54G2A.17a (Y54G2A.17) mRNA, complete cds. 11/11 A 
NM_001028319 NCBI Caenorhabditis elegans Y54G2A.17c (Y54G2A.17) mRNA, complete cds. 11/11 None
SNAP00000036495 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2859069:2890944:-1 11/11 None
GENEFINDER00000036603 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2879250:2884211:-1 11/11 None
Y54G2A.17a ENSEMBL cdna:known chromosome:CEL140:IV:2872221:2882300:-1 gene:Y54G2A.17 11/11 A 
Y54G2A.17b ENSEMBL cdna:known chromosome:CEL140:IV:2872221:2885253:-1 gene:Y54G2A.17 11/11 A 
Y54G2A.17c.2 ENSEMBL cdna:known chromosome:CEL140:IV:2881584:2890446:-1 gene:Y54G2A.17 11/11 None
Y54G2A.17c.3 ENSEMBL cdna:known chromosome:CEL140:IV:2881584:2885289:-1 gene:Y54G2A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2881567-2881847(-) 95.36 100.0
Public Domain and Genome References
Ensembl Y54G2A.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13742 Hypothetical protein Y54G2A.17b [Caenorhabditis elegans] ref|NP_500265.2| Y54G2A.17b [Caenorhabditis elegans] 0.0
blast AAP13741 Hypothetical protein Y54G2A.17a [Caenorhabditis elegans] ref|NP_500264.3| Y54G2A.17a [Caenorhabditis elegans] 0.0
blast CAE67933 Hypothetical protein CBG13533 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 7.4E-59
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 4.6E-17
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 7.4E-59
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 4.6E-17
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 7.4E-59
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 2.6E-11
Sequence
Target Sequence 
>C. ELEGANS:174454_S_AT
caggctggaagattcaactgctcgaattcgggctccgcagagcacagggaccgaacggag
ggttgactgctagcaagtattgttatattggaggtttcgatgccaccagcaatgtgctcg
ccgggaagttgtacggaattccggtaaagggaacccaggcgcacagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGCTGGAAGATTCAACTGCTCGA 440 209 14 Antisense
GATTCAACTGCTCGAATTCGGGCTC 424 429 24 Antisense
TCCGCAGAGCACAGGGACCGAACGG 285 593 47 Antisense
GGACCGAACGGAGGGTTGACTGCTA 241 1 61 Antisense
AACGGAGGGTTGACTGCTAGCAAGT 133 143 67 Antisense
GACTGCTAGCAAGTATTGTTATATT 335 375 78 Antisense
TATTGGAGGTTTCGATGCCACCAGC 338 665 99 Antisense
TTCGATGCCACCAGCAATGTGCTCG 114 695 109 Antisense
AATGTGCTCGCCGGGAAGTTGTACG 453 161 124 Antisense
GCTCGCCGGGAAGTTGTACGGAATT 684 293 129 Antisense
GTAAAGGGAACCCAGGCGCACAGCT 457 461 157 Antisense
Sequence Source Affymetrix Proprietary Database