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[174453_at]

Description CEC8003_rc /REP_DB=TREMBL Accession /GB=C10800 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk154b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 86      6grp_total > 48      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 850
1 2 3 4 range
A 1251.1
(2.9)
P 		821.3
(-1.2)
P 		629.2
(-3)
P 		1265.6
(3)
P 		636
B 1432.4
(2.8)
P 		738.1
(-2.1)
P 		604.1
(-3)
P 		1454.3
(3)
P 		850
C 1092.4
(1.7)
P 		804.1
(-1.4)
P 		650.5
(-3)
P 		1210.3
(3)
P 		560
avr 1258.6
(2.5) 		787.8
(-1.6) 		627.9
(-3) 		1310.1
(3) 		682

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 867
1 2 3 4 5 6 range
A 1115.6
(2.6)
P 		870.7
(-0.6)
P 		688
(-3)
P 		761.7
(-2)
P 		1143.5
(3)
P 		1022.6
(1.4)
P 		456
B 1438.5
(3)
P 		1116.4
(-0.5)
P 		887.4
(-3)
P 		1105.8
(-0.6)
P 		961.3
(-2.2)
P 		1231.1
(0.7)
P 		551
C 1023.2
(-0.2)
P 		1023.6
(-0.2)
P 		612.9
(-3)
P 		990.6
(-0.4)
P 		913.9
(-0.9)
P 		1480.3
(3)
P 		867
avr 1192.4
(2.4) 		1003.6
(0.2) 		729.4
(-3) 		952.7
(-0.4) 		1006.2
(0.2) 		1244.7
(3) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 455.5
(3)
P 		178.3
(-2.7)
P 		164.5
(-3)
P 		185.3
(-2.6)
P 		291
B 456.8
(3)
P 		182.3
(-2.2)
P 		140
(-3)
P 		309.9
(0.2)
P 		317
C 361.6
(3)
P 		231.2
(-2)
P 		226.7
(-2.1)
P 		204.1
(-3)
P 		158
avr 424.6
(3) 		197.3
(-2.5) 		177.1
(-3) 		233.1
(-1.6) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 205.7
(-1.3)
P 		309.6
(1.9)
P 		149.8
(-3)
P 		193.2
(-1.7)
P 		345
(3)
P 		249
(0)
P 		195
B 500.5
(3)
P 		371.6
(0.3)
P 		215.5
(-3)
P 		292.9
(-1.4)
P 		390.6
(0.7)
P 		459.1
(2.1)
P 		285
C 379.3
(0.9)
P 		312.3
(-0.2)
P 		156
(-3)
P 		199.2
(-2.2)
P 		295.7
(-0.5)
P 		495.5
(3)
P 		340
avr 361.8
(2) 		331.2
(1.2) 		173.8
(-3) 		228.4
(-1.6) 		343.8
(1.5) 		401.2
(3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22127
Sequence Type Exemplar sequence
Representative Public ID CEC8003 NCBI
Target Description CEC8003_rc /REP_DB=TREMBL Accession /GB=C10800 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk154b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C34F6.10 ENSEMBL cdna:known chromosome:CEL140:X:11229192:11233974:-1 gene:C34F6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11229201-11229489(-) 92.01 100.0
Public Domain and Genome References
Ensembl C34F6.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03937 Hypothetical protein C34F6.10 [Caenorhabditis elegans] ref|NP_509877.1| C34F6.10 [Caenorhabditis elegans] 0.0
blast CAE70677 Hypothetical protein CBG17392 [Caenorhabditis briggsae] 1.0E-179
blast XP_228509 PREDICTED: similar to Gene model 784 [Rattus norvegicus] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.1E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.0E-8
Pfam IPR003961 EMBL-EBI Fibronectin, type III 8.4E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
C34F6.10 1 1067-1086
Sequence
Target Sequence 
>C. ELEGANS:174453_AT
attgattccgattgaaaatccccaaaattacatcgtaggactctagaagctctcacacat
cgtattattttacaaacatggtcccttctgttcatattttttaatgttggtcatccggtt
ttttgttcaaattcatttccttttttcttttatcaattttatgtttcatcctgccactgt
tgtaaatgtttgccgttgatcggaggtgaaaattgttctcccattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATTCCGATTGAAAATCCCCAA 546 3 13 Antisense
GAAAATCCCCAAAATTACATCGTAG 663 351 26 Antisense
GTAGGACTCTAGAAGCTCTCACACA 191 457 47 Antisense
GAAGCTCTCACACATCGTATTATTT 300 343 58 Antisense
TATTTTACAAACATGGTCCCTTCTG 677 659 78 Antisense
AAACATGGTCCCTTCTGTTCATATT 339 129 86 Antisense
TTAATGTTGGTCATCCGGTTTTTTG 680 681 113 Antisense
CAATTTTATGTTTCATCCTGCCACT 92 181 166 Antisense
CTGCCACTGTTGTAAATGTTTGCCG 334 237 183 Antisense
ATGTTTGCCGTTGATCGGAGGTGAA 332 47 198 Antisense
GGAGGTGAAAATTGTTCTCCCATTT 190 517 214 Antisense
Sequence Source Affymetrix Proprietary Database