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[174451_at]

Description C30749_rc /REP_DB=TREMBL Accession /GB=C30749 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk257g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 96      6grp_total > 96      4grp_total > 21      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 616.4
(1.8)
P 		487.9
(-0.5)
P 		352.8
(-3)
P 		683.1
(3)
P 		330
B 645.8
(0.9)
P 		599.3
(0.1)
P 		409.6
(-3)
P 		773.7
(3)
P 		364
C 546.9
(0.2)
P 		483
(-0.8)
P 		325.9
(-3)
P 		745.3
(3)
P 		419
avr 603
(0.9) 		523.4
(-0.4) 		362.8
(-3) 		734
(3) 		371

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1044
1 2 3 4 5 6 range
A 843.8
(-0.5)
P 		635.6
(-3)
P 		989.1
(1.2)
P 		1037.1
(1.8)
P 		1141.9
(3)
P 		1107.5
(2.6)
P 		506
B 810.4
(-1.4)
P 		657.8
(-2.3)
P 		551.2
(-3)
P 		774.7
(-1.6)
P 		1147.4
(0.7)
P 		1528.4
(3)
P 		977
C 484
(-3)
P 		855.8
(1.3)
P 		1000.1
(3)
P 		836.2
(1.1)
P 		796
(0.6)
P 		865.7
(1.4)
P 		516
avr 712.7
(-3) 		716.4
(-3) 		846.8
(-1.2) 		882.7
(-0.8) 		1028.4
(1.2) 		1167.2
(3) 		455
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 224.4
(3)
P 		105.9
(-2.4)
P 		92.2
(-3)
P 		100
(-2.6)
P 		132
B 205.9
(3)
P 		148
(-0.1)
P 		94.9
(-3)
P 		164.9
(0.8)
P 		111
C 181
(3)
P 		138.9
(-0.7)
P 		113.6
(-3)
P 		125.7
(-1.9)
P 		67
avr 203.8
(3) 		130.9
(-1.2) 		100.2
(-3) 		130.2
(-1.3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 155.6
(-3)
P 		226.1
(-0.8)
P 		215.4
(-1.1)
P 		263
(0.4)
P 		344.6
(3)
P 		269.6
(0.6)
P 		189
B 282
(-1)
P 		219
(-1.8)
P 		133.8
(-3)
P 		205.2
(-2)
P 		466.2
(1.6)
P 		569.9
(3)
P 		436
C 179.4
(-2.4)
P 		261.1
(1.6)
P 		254.6
(1.3)
P 		168.2
(-3)
P 		257.6
(1.4)
P 		289.8
(3)
P 		122
avr 205.7
(-2.8) 		235.4
(-1.8) 		201.3
(-3) 		212.1
(-2.6) 		356.1
(2.3) 		376.4
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21354
Sequence Type Exemplar sequence
Representative Public ID C30749 NCBI
Target Description C30749_rc /REP_DB=TREMBL Accession /GB=C30749 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk257g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068883 NCBI Caenorhabditis elegans C33H5.19 (C33H5.19) mRNA, complete cds. 11/11 None
SNAP00000004478 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7782789:7783808:-1 11/11 None
GENEFINDER00000004497 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7782789:7783808:-1 11/11 None
C33H5.19.1 ENSEMBL cdna:known chromosome:CEL140:IV:7782599:7783834:-1 gene:C33H5.19 11/11 None
C33H5.19.2 ENSEMBL cdna:known chromosome:CEL140:IV:7782789:7783836:-1 gene:C33H5.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7783292-7783545(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.19
Entrez Gene 177563 Entrez gene
SwissProt Q95QS6 EMBL-EBI
WormBase CE26908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84503 Hypothetical protein C33H5.19 [Caenorhabditis elegans] ref|NP_501284.1| C33H5.19 [Caenorhabditis elegans] 1.0E-107
blast CAE70882 Hypothetical protein CBG17672 [Caenorhabditis briggsae] 7.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501284.1 3 95-117,132-154,187-204
C33H5.19.1 3 95-117,132-154,187-204
C33H5.19.2 3 95-117,132-154,187-204
SNAP00000004478 3 95-117,132-154,187-204
GENEFINDER00000004497 3 95-117,132-154,187-204
Sequence
Target Sequence 
>C. ELEGANS:174451_AT
atttctagtcaattctattccttttattggattcggtgttcttgacaacatgattatgat
cctagctggcgagtatattgatcaaaaactcggggccgttctagctatatcaactatggc
agccgctgcactcggaaatcttatctcggatattgctggcgttggtctcgcgcattatgt
agaggttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTAGTCAATTCTATTCCTTTT 222 17 25 Antisense
ATTCTATTCCTTTTATTGGATTCGG 594 9 36 Antisense
GGATTCGGTGTTCTTGACAACATGA 19 509 53 Antisense
GATTATGATCCTAGCTGGCGAGTAT 246 429 76 Antisense
TTGATCAAAAACTCGGGGCCGTTCT 571 621 102 Antisense
GGCCGTTCTAGCTATATCAACTATG 120 543 118 Antisense
ATATCAACTATGGCAGCCGCTGCAC 406 19 131 Antisense
CAGCCGCTGCACTCGGAAATCTTAT 334 203 144 Antisense
ATCTCGGATATTGCTGGCGTTGGTC 558 31 167 Antisense
TGGCGTTGGTCTCGCGCATTATGTA 74 543 181 Antisense
GTCTCGCGCATTATGTAGAGGTTGC 316 471 189 Antisense
Sequence Source Affymetrix Proprietary Database