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[174450_at]

Description CEC415_rc /REP_DB=TREMBL Accession /GB=C07415 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk138h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 82      6grp_total > 29      4grp_total > 14      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 295.2
(2.5)
P 		221.8
(-1.1)
P 		181.4
(-3)
P 		306.5
(3)
P 		125
B 289.3
(0)
P 		315
(0.9)
P 		197.5
(-3)
P 		378.1
(3)
P 		181
C 296.1
(1.6)
P 		191.2
(-3)
P 		327.8
(3)
P 		258.4
(-0)
P 		137
avr 293.5
(1.4) 		242.7
(-2.5) 		235.6
(-3) 		314.3
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 347.4
(0)
P 		246.5
(-2.1)
P 		230
(-2.4)
P 		203.2
(-3)
P 		489.3
(3)
P 		328.2
(-0.4)
P 		286
B 497.2
(3)
P 		358.8
(-0.7)
P 		270.3
(-3)
P 		356.9
(-0.7)
P 		432
(1.3)
P 		319.7
(-1.7)
P 		227
C 303.6
(1.1)
P 		361
(2.3)
P 		122.7
(-3)
P 		390.6
(3)
P 		368.3
(2.5)
P 		341.7
(1.9)
P 		268
avr 382.7
(1.7) 		322.1
(0.1) 		207.7
(-3) 		316.9
(-0.1) 		429.9
(3) 		329.9
(0.3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 107.5
(3)
P 		48.2
(-2.7)
P 		47.4
(-2.8)
P 		44.9
(-3)
P 		63
B 92.3
(3)
P 		77.8
(1.1)
P 		45.8
(-3)
P 		80.6
(1.5)
P 		47
C 98
(1.6)
P 		55
(-2)
P 		114.3
(3)
P 		43.6
(-3)
P 		71
avr 99.3
(3) 		60.3
(-2.5) 		69.2
(-1.2) 		56.4
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 64
(-2.1)
P 		87.7
(-0.7)
P 		50.1
(-3)
P 		51.5
(-2.9)
P 		147.6
(3)
P 		79.9
(-1.2)
P 		98
B 173
(2.9)
P 		119.4
(-0.1)
P 		65.6
(-3)
P 		94.5
(-1.4)
P 		175.5
(3)
P 		119.2
(-0.1)
P 		110
C 112.5
(2.5)
P 		110.2
(2.4)
P 		31.2
(-3)
P 		78.5
(0.2)
P 		119.2
(3)
P 		114.4
(2.7)
P 		88
avr 116.5
(1.1) 		105.8
(0.5) 		49
(-3) 		74.8
(-1.4) 		147.4
(3) 		104.5
(0.4) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22153
Sequence Type Exemplar sequence
Representative Public ID CEC415 NCBI
Target Description CEC415_rc /REP_DB=TREMBL Accession /GB=C07415 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk138h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077536 NCBI Caenorhabditis elegans F52D10.2 (F52D10.2) mRNA, complete cds. 11/11 None
F52D10.2 ENSEMBL cdna:known chromosome:CEL140:X:11589671:11591640:-1 gene:F52D10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11589680-11590160(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D10.2
Entrez Gene 181347 Entrez gene
SwissProt Q20652 EMBL-EBI
WormBase CE03388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91471 Hypothetical protein F52D10.2 [Caenorhabditis elegans] ref|NP_509937.1| F52D10.2 [Caenorhabditis elegans] 1.0E-163
blast CAE70610 Hypothetical protein CBG17293 [Caenorhabditis briggsae] 1.0E-157
blast XP_391828 PREDICTED: similar to CG8312-PA, isoform A [Apis mellifera] 6.0E-50
Sequence
Target Sequence 
>C. ELEGANS:174450_AT
atgatattcgactcttttcgcgggtccgtcgcttttttgttttatttttgttccaaacct
ctcaaacctattaactaaaacaaaaagtctcagaattctcagcatcatttttatattctt
ttccctctttctttccttctcgccatatgttgaacccaaaaattatcggttttgtcctgt
atgactatactttatatactttaaaattagactttttctcttagttaacttaaactaaat
gttcgctagacacgatcctctctcctactgcatctgttcaaagattctgccaatactatt
attttaatgtaatatcgattgattgtcattaatgtattactcgtttgtgattgttctaac
attttccgcaattttattgcaattttttttgtttggagctgggtcatgactagacatgac
ttgtcgtttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATATTCGACTCTTTTCGCGGGT 150 47 27 Antisense
TTGTTCCAAACCTCTCAAACCTATT 553 673 74 Antisense
AAGTCTCAGAATTCTCAGCATCATT 622 157 111 Antisense
ATCATTTTTATATTCTTTTCCCTCT 515 29 130 Antisense
TTCCTTCTCGCCATATGTTGAACCC 678 699 159 Antisense
AATTATCGGTTTTGTCCTGTATGAC 660 175 187 Antisense
AATGTTCGCTAGACACGATCCTCTC 337 163 264 Antisense
CTCTCCTACTGCATCTGTTCAAAGA 579 231 286 Antisense
GTGATTGTTCTAACATTTTCCGCAA 548 483 373 Antisense
TGTTTGGAGCTGGGTCATGACTAGA 686 559 416 Antisense
GACTAGACATGACTTGTCGTTTCTG 78 373 434 Antisense
Sequence Source Affymetrix Proprietary Database