[Home] | [Total List]

[174448_s_at] fatty acid transport protein

Description CEK132DXF /REP_DB=TREMBL Accession /GB=D68517 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk132d10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 54      6grp_total > 82      4grp_total > 57      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1735
1 2 3 4 range
A 313.7
(-2.7)
P 		1562.7
(1.7)
P 		1949.5
(3)
P 		230.1
(-3)
P 		1719
B 396.4
(-2.3)
P 		1377.2
(1.2)
P 		1878.4
(3)
P 		214.8
(-3)
P 		1664
C 387.7
(-2.4)
P 		1387.8
(1.3)
P 		1842.2
(3)
P 		229.3
(-3)
P 		1613
avr 365.9
(-2.5) 		1442.6
(1.4) 		1890
(3) 		224.7
(-3) 		1665

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1026
1 2 3 4 5 6 range
A 739.9
(-2.7)
P 		1407.8
(2.8)
P 		930
(-1.2)
P 		1428.4
(3)
P 		1400.4
(2.8)
P 		708.4
(-3)
P 		720
B 665.6
(-2.7)
P 		1433.5
(2.6)
P 		791.2
(-1.9)
P 		1488.3
(3)
P 		1244.9
(1.3)
P 		627.7
(-3)
P 		861
C 588.7
(-3)
P 		1386.5
(1.7)
P 		1052.3
(-0.3)
P 		1614.5
(3)
P 		1120.5
(0.1)
P 		597.7
(-2.9)
P 		1026
avr 664.7
(-2.9) 		1409.3
(2.3) 		924.5
(-1.1) 		1510.4
(3) 		1255.3
(1.2) 		644.6
(-3) 		866
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 114.2
(-2)
P 		339.2
(0.9)
P 		509.6
(3)
P 		33.7
(-3)
P 		476
B 126.4
(-1.8)
P 		340.1
(1.5)
P 		435.3
(3)
P 		45.8
(-3)
P 		390
C 128.3
(-2.1)
P 		399
(0.6)
P 		642.1
(3)
P 		38.7
(-3)
P 		603
avr 123
(-2) 		359.4
(0.9) 		529
(3) 		39.4
(-3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 136.4
(-3)
P 		500.7
(3)
P 		202.5
(-1.9)
P 		362.3
(0.7)
P 		422.6
(1.7)
P 		172.5
(-2.4)
P 		364
B 231.6
(-2.2)
P 		477.2
(2.5)
P 		192.1
(-3)
P 		394.2
(0.9)
P 		505.8
(3)
P 		234.1
(-2.2)
P 		314
C 218.2
(-2.5)
P 		423.1
(3)
P 		267.8
(-1.2)
P 		324.7
(0.4)
P 		362.6
(1.4)
P 		200.1
(-3)
P 		223
avr 195.4
(-3) 		467
(3) 		220.8
(-2.4) 		360.4
(0.6) 		430.3
(2.2) 		202.2
(-2.8) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174448_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21399
Sequence Type Exemplar sequence
Representative Public ID CEK132DXF NCBI
Target Description CEK132DXF /REP_DB=TREMBL Accession /GB=D68517 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk132d10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069966 NCBI Caenorhabditis elegans F28D1.9 (F28D1.9) mRNA, complete cds. 11/11 None
F28D1.9 ENSEMBL cdna:known chromosome:CEL140:IV:12392100:12398675:-1 gene:F28D1.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12392163-12392450(-) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid transport protein
Ensembl F28D1.9
Entrez Gene 178190 Entrez gene
SwissProt Q19878 EMBL-EBI
WormBase CE05749 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30704.1.S1_S_AT similar to solute carrier family 27 (fatty acid transporter), member 4 cfa
DROSOPHILA_2:1629869_S_AT Fatty acid (long chain) transport protein dm
DROSGENOME1:141619_AT Fatty acid (long chain) transport protein dm
CHICKEN:GGA.1737.1.S1_AT solute carrier family 27 (fatty acid transporter), member 4 gga
CHICKEN:GGA.8457.1.S1_AT solute carrier family 27 (fatty acid transporter), member 4 gga
CHICKEN:GGAAFFX.3079.1.S1_AT solute carrier family 27 (fatty acid transporter), member 4 gga
HU35KSUBA:RC_AA418394_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HU35KSUBD:RC_H16504_AT solute carrier family 27 (fatty acid transporter), member 4 hs
U133_X3P:HS.248953.0.S2_3P_X_AT solute carrier family 27 (fatty acid transporter), member 4 hs
U133_X3P:HS.248953.0.S2_3P_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HG-U133_PLUS_2:225779_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HG-U133B:225779_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HG-U95C:61357_AT solute carrier family 27 (fatty acid transporter), member 4 hs
MG-U74AV2:97957_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MOE430A:1424441_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MOUSE430A_2:1424441_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MOUSE430_2:1424441_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MU19KSUBB:TC31655_AT Solute carrier family 27 (fatty acid transporter), member 4, mRNA (cDNA clone MGC:28448 IMAGE:4158956) mm
RAE230A:1377123_AT solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
RAT230_2:1377123_AT solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
RAE230B:1381028_AT Solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
RAT230_2:1381028_AT Solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94602 Hypothetical protein F28D1.9 [Caenorhabditis elegans] ref|NP_502367.1| F28D1.9 [Caenorhabditis elegans] 0.0
blast CAE59853 Hypothetical protein CBG03326 [Caenorhabditis briggsae] 0.0
blast AAA81698 Hypothetical protein D1009.1a [Caenorhabditis elegans] ref|NP_509509.1| D1009.1a [Caenorhabditis elegans] 1.0E-178
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-67
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502367.1 1 21-43
F28D1.9 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:174448_S_AT
attgtattaatttatttgctccgtttccgtttcactgtgtaatttcgccatgtcttaccg
gttttctcttcgtctttccattacctaattcgttttttcttctcgcagactttcacacgt
atcctcagtatagatccaatgtgcgcattccgcatgaaatgcggggtcccgtcagaaccc
cgacagccagtgctttattaaattcctgttgtgtttctctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTATTAATTTATTTGCTCCGTT 188 5 27 Antisense
GTTTCCGTTTCACTGTGTAATTTCG 296 451 49 Antisense
TTCACTGTGTAATTTCGCCATGTCT 109 687 57 Antisense
TGTGTAATTTCGCCATGTCTTACCG 59 555 62 Antisense
GTATCCTCAGTATAGATCCAATGTG 359 455 145 Antisense
ATAGATCCAATGTGCGCATTCCGCA 193 23 156 Antisense
GATCCAATGTGCGCATTCCGCATGA 137 415 159 Antisense
AATGTGCGCATTCCGCATGAAATGC 65 163 164 Antisense
TGAAATGCGGGGTCCCGTCAGAACC 4 573 181 Antisense
CCCCGACAGCCAGTGCTTTATTAAA 184 261 204 Antisense
TTAAATTCCTGTTGTGTTTCTCTCT 397 683 224 Antisense
Sequence Source Affymetrix Proprietary Database