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[174447_at]

Description C37206_rc /REP_DB=TREMBL Accession /GB=C37206 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk460f12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 08      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 75      6grp_total > 19      4grp_total > 60      6grp_cgc > 01      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 528
1 2 3 4 range
A 874
(2.3)
P 		805.6
(1.2)
P 		917.3
(3)
P 		548.9
(-3)
P 		368
B 961.6
(1.6)
P 		1008.4
(2.2)
P 		1077.2
(3)
P 		586.2
(-3)
P 		491
C 964.6
(1.9)
P 		1031.4
(2.6)
P 		1061.6
(3)
P 		549.1
(-3)
P 		513
avr 933.4
(1.9) 		948.5
(2.1) 		1018.7
(3) 		561.4
(-3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 564
1 2 3 4 5 6 range
A 1298.2
(3)
P 		908.7
(-2)
P 		1055.3
(-0.1)
P 		833.6
(-3)
P 		1148.2
(1.1)
P 		931
(-1.7)
P 		465
B 1250.2
(3)
P 		767.1
(-2.6)
P 		733.9
(-3)
P 		1052.1
(0.7)
P 		1058.6
(0.8)
P 		933.6
(-0.7)
P 		516
C 965.1
(1)
P 		798.7
(-3)
P 		1036.6
(2.8)
P 		1046.1
(3)
P 		888.3
(-0.8)
P 		850.1
(-1.8)
P 		247
avr 1171.2
(3) 		824.8
(-3) 		941.9
(-1) 		977.3
(-0.4) 		1031.7
(0.6) 		904.9
(-1.6) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 318.2
(3)
P 		174.9
(-0.6)
P 		239.8
(1)
P 		80.3
(-3)
P 		238
B 306.7
(3)
P 		249.1
(1.1)
P 		249.6
(1.1)
P 		124.9
(-3)
P 		182
C 319.3
(1.9)
P 		296.5
(1.4)
P 		370
(3)
P 		92.6
(-3)
P 		277
avr 314.7
(3) 		240.2
(0.9) 		286.5
(2.2) 		99.3
(-3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 239.3
(-1.8)
P 		323.2
(2)
P 		229.8
(-2.2)
P 		211.4
(-3)
P 		346.5
(3)
P 		226.7
(-2.3)
P 		135
B 435
(3)
P 		255.3
(-1.2)
P 		178.2
(-3)
P 		278.7
(-0.7)
P 		430.1
(2.9)
P 		348.1
(1)
P 		257
C 357.7
(3)
P 		243.7
(-1.6)
P 		263.8
(-0.8)
P 		210.4
(-3)
P 		287.4
(0.1)
P 		284.6
(0)
P 		147
avr 344
(2.5) 		274.1
(-0.7) 		223.9
(-3) 		233.5
(-2.6) 		354.7
(3) 		286.5
(-0.1) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20349
Sequence Type Exemplar sequence
Representative Public ID C37206 NCBI
Target Description C37206_rc /REP_DB=TREMBL Accession /GB=C37206 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk460f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059662 NCBI Caenorhabditis elegans DYnein Light chain (Tctex type] family member (dylt-1) (dylt-1) mRNA, complete cds. 11/11 None
F13G3.4 ENSEMBL cdna:known chromosome:CEL140:I:7308198:7309044:-1 gene:F13G3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7308215-7308614(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dylt-1
Ensembl F13G3.4
Entrez Gene 172476 Entrez gene
SwissProt Q19416 EMBL-EBI
WormBase CE17659 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95796 Hypothetical protein F13G3.4 [Caenorhabditis elegans] ref|NP_492063.1| DYnein Light chain (Tctex type] family member (dylt-1) [Caenorhabditis elegans] 7.0E-54
blast CAE74213 Hypothetical protein CBG21895 [Caenorhabditis briggsae] 4.0E-51
blast XP_767597 hypothetical protein GLP_442_13579_13256 [Giardia lamblia ATCC 50803] gb|EAA37443.1| GLP_442_13579_13256 [Giardia lamblia ATCC 50803] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005334 EMBL-EBI Tctex-1 family 1.6E-53
Sequence
Target Sequence 
>C. ELEGANS:174447_AT
aatttaacaatccacagcttcatcttatatgtctactctggttttcctcgtttaccgcca
attctccccttatttctgattgtttttttcttccccattcatcacacactatcatgtttt
atattcagacctattacctgtccagaaaaactgagctgaaaaaatccggacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTAACAATCCACAGCTTCATCT 450 175 76 Antisense
ACAGCTTCATCTTATATGTCTACTC 190 109 89 Antisense
TTATATGTCTACTCTGGTTTTCCTC 652 679 100 Antisense
CAATTCTCCCCTTATTTCTGATTGT 493 179 134 Antisense
TTCTCCCCTTATTTCTGATTGTTTT 440 693 137 Antisense
CCCCATTCATCACACACTATCATGT 642 261 168 Antisense
TCATCACACACTATCATGTTTTATA 224 621 174 Antisense
CTATCATGTTTTATATTCAGACCTA 204 225 184 Antisense
ATTCAGACCTATTACCTGTCCAGAA 478 9 198 Antisense
TACCTGTCCAGAAAAACTGAGCTGA 594 649 210 Antisense
ACTGAGCTGAAAAAATCCGGACGAG 253 95 225 Antisense
Sequence Source Affymetrix Proprietary Database