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[174446_s_at]

Description CEC4353_rc /REP_DB=TREMBL Accession /GB=C10435 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk146g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1014
1 2 3 4 range
A 373.5
(-2)
P 		373
(-2)
P 		216.9
(-3)
P 		1188
(3)
P 		971
B 439.6
(-1.5)
P 		259.1
(-2.6)
P 		187.3
(-3)
P 		1200.9
(3)
P 		1014
C 419.9
(-1.8)
P 		223
(-3)
P 		222.8
(-3)
P 		1194.4
(3)
P 		972
avr 411
(-1.8) 		285
(-2.5) 		209
(-3) 		1194.4
(3) 		985

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1355
1 2 3 4 5 6 range
A 307.7
(-2.9)
P 		338.8
(-2.8)
P 		295.6
(-3)
P 		642.7
(-1.3)
P 		1149.1
(1.3)
P 		1489.2
(3)
P 		1194
B 385.9
(-2.8)
P 		347
(-3)
P 		365.5
(-2.9)
P 		570.2
(-1.8)
P 		1189.4
(1.4)
P 		1484.6
(3)
P 		1138
C 397.8
(-2.7)
P 		321.3
(-3)
P 		335.2
(-2.9)
P 		496.7
(-2.2)
P 		1126
(0.6)
P 		1651
(3)
P 		1330
avr 363.8
(-2.8) 		335.7
(-3) 		332.1
(-3) 		569.9
(-1.8) 		1154.8
(1.1) 		1541.6
(3) 		1210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 136
(1.1)
P 		81
(-1.8)
P 		56.7
(-3)
P 		173.9
(3)
P 		117
B 140.2
(-0.3)
P 		64
(-2.4)
P 		43.4
(-3)
P 		255.9
(3)
P 		213
C 139
(0.3)
P 		64.1
(-3)
P 		77.6
(-2.4)
P 		201.4
(3)
P 		137
avr 138.4
(0.1) 		69.7
(-2.6) 		59.2
(-3) 		210.4
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 56.7
(-3)
P 		120.5
(-1.7)
P 		64.4
(-2.8)
P 		163
(-0.9)
P 		346.7
(2.7)
P 		362.6
(3)
P 		306
B 134.3
(-2.4)
P 		115.5
(-2.7)
P 		88.8
(-3)
P 		151
(-2.2)
P 		483.2
(2.1)
P 		553.6
(3)
P 		465
C 147.5
(-2.2)
P 		98
(-2.8)
P 		85.3
(-3)
P 		99.9
(-2.8)
P 		364.3
(0.6)
P 		552.7
(3)
P 		467
avr 112.8
(-2.5) 		111.3
(-2.5) 		79.5
(-3) 		138
(-2.1) 		398.1
(1.7) 		489.6
(3) 		410
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174446_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21402
Sequence Type Exemplar sequence
Representative Public ID CEC4353 NCBI
Target Description CEC4353_rc /REP_DB=TREMBL Accession /GB=C10435 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk146g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069385(11), NM_001027974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069385 NCBI Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds. 11/11 A 
NM_001027974 NCBI Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds. 11/11 None
SNAP00000013888 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9922023:9923717:-1 11/11 None
GENEFINDER00000013893 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9922023:9928194:-1 11/11 None
F25H8.5a ENSEMBL cdna:known chromosome:CEL140:IV:9921977:9928194:-1 gene:F25H8.5 11/11 A 
F25H8.5d ENSEMBL cdna:known chromosome:CEL140:IV:9922023:9928194:-1 gene:F25H8.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069386 4/11 Cross Hyb Matching Probes A 
U52071 5/11 Cross Hyb Matching Probes A 
F25H8.5c 4/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177846 4 2 NM_001027974 174446_s_at (11), 188100_s_at (11)
NM_069385 174446_s_at (11), 188100_s_at (11), 188104_s_at (11)
NM_069386 188100_s_at (11), 188104_s_at (11)
NM_069387 188104_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9921948-9922501(-) 97.48 99.5
Public Domain and Genome References
Ensembl F25H8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93285 Hypothetical protein F25H8.5a [Caenorhabditis elegans] ref|NP_501786.2| Dauer Up-Regulated family member (dur-1) [Caenorhabditis elegans] 0.0
blast CAC42291 Hypothetical protein F25H8.5c [Caenorhabditis elegans] ref|NP_501787.2| Dauer Up-Regulated family member (dur-1) [Caenorhabditis elegans] 0.0
blast CAE45744 Hypothetical protein F25H8.5d [Caenorhabditis elegans] ref|NP_001023145.1| Dauer Up-Regulated family member (dur-1) [Caenorhabditis elegans] 1.0E-160
blast CAA93285 Hypothetical protein F25H8.5a [Caenorhabditis elegans] ref|NP_501786.2| Dauer Up-Regulated family member (dur-1) [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 4.4E-13
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 4.4E-13
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 4.4E-13
Sequence
Target Sequence 
>C. ELEGANS:174446_S_AT
gctggtggagccgtagttgatggagttgctgctgctggaggagctgtcgttggtggagca
aaggcagttggatcgggaatcgctgacggagcaaaatttgtgggagaaaacgttgcctat
ggagctggagctgttgctggaggagcaagctgccggtggagccgttgttgatggagcagc
agcagcaggtggtgctgttgtagatggtgccaaagcagttggaggatttgttagcgatac
tttcagctcagcaagagatgaaactggtgaagcactgaaaactgctggttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGTGGAGCCGTAGTTGATGGAG 66 295 17 Antisense
CCGTAGTTGATGGAGTTGCTGCTGC 405 263 27 Antisense
TGCTGGAGGAGCTGTCGTTGGTGGA 154 581 49 Antisense
TGGATCGGGAATCGCTGACGGAGCA 249 551 85 Antisense
CTGCCGGTGGAGCCGTTGTTGATGG 441 237 166 Antisense
GAGCCGTTGTTGATGGAGCAGCAGC 310 385 175 Antisense
GCAGCAGCAGCAGGTGGTGCTGTTG 329 313 192 Antisense
GGTGCTGTTGTAGATGGTGCCAAAG 572 499 207 Antisense
AGCAGTTGGAGGATTTGTTAGCGAT 313 75 230 Antisense
GTTAGCGATACTTTCAGCTCAGCAA 428 445 246 Antisense
GAAGCACTGAAAACTGCTGGTTCAA 2 341 285 Antisense
Sequence Source Affymetrix Proprietary Database