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[174443_at]

Description CEK003H3R_rc /REP_DB=TREMBL Accession /GB=D27793 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3h3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 84      6grp_total > 39      4grp_total > 51      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 653.3
(0.9)
P 		744.2
(3)
P 		636.1
(0.5)
P 		484
(-3)
P 		260
B 671.7
(1)
P 		824
(3)
P 		666.1
(0.9)
P 		373.6
(-3)
P 		450
C 622.7
(-0.4)
P 		815.4
(3)
P 		711.6
(1.2)
P 		474
(-3)
P 		341
avr 649.2
(0.5) 		794.5
(3) 		671.3
(0.9) 		443.9
(-3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 826.6
(3)
P 		515.4
(-1.1)
P 		461.2
(-1.8)
P 		374.2
(-3)
P 		682.3
(1.1)
P 		587.7
(-0.2)
P 		452
B 690.4
(1.1)
P 		645.3
(0.2)
P 		486.6
(-3)
P 		563.4
(-1.5)
P 		578.5
(-1.1)
P 		784.5
(3)
P 		298
C 654.3
(3)
P 		614.3
(1.8)
P 		543.6
(-0.2)
P 		447.2
(-3)
P 		588
(1.1)
P 		643
(2.7)
P 		207
avr 723.8
(3) 		591.7
(-0) 		497.1
(-2.2) 		461.6
(-3) 		616.3
(0.5) 		671.7
(1.8) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 237.9
(3)
P 		161.5
(0.3)
P 		166.3
(0.4)
P 		70.9
(-3)
P 		167
B 214.2
(3)
P 		203.5
(2.5)
P 		154.3
(0.3)
P 		79.6
(-3)
P 		135
C 206.1
(1.5)
P 		234.4
(2.5)
P 		248
(3)
P 		79.9
(-3)
P 		168
avr 219.4
(3) 		199.8
(2.2) 		189.5
(1.7) 		76.8
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 152.4
(0.1)
P 		183.3
(1.8)
P 		100.4
(-2.7)
P 		94.9
(-3)
P 		205.9
(3)
P 		143.1
(-0.4)
P 		111
B 240.2
(1.2)
P 		214.8
(0.3)
P 		118.2
(-3)
P 		149.2
(-1.9)
P 		235
(1)
P 		292.5
(3)
P 		174
C 242.5
(3)
P 		187.4
(0.8)
P 		138.4
(-1.1)
P 		89.9
(-3)
P 		190.3
(0.9)
P 		215.2
(1.9)
P 		153
avr 211.7
(2.7) 		195.2
(1.8) 		119
(-2.6) 		111.3
(-3) 		210.4
(2.6) 		216.9
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20506
Sequence Type Exemplar sequence
Representative Public ID CEK003H3R NCBI
Target Description CEK003H3R_rc /REP_DB=TREMBL Accession /GB=D27793 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK003H3R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK003H3R CEK003H3R_rc /REP_DB=TREMBL Accession /GB=D27793 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3h3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14373405-14373747(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174443_AT
atatgtgtgtgtcttcgttgttgtgctgttctctgttattacgacctccttcccaatttt
cgatttaacattaatttgtatgtgttgtttttgtgatgatgctcaatgttcctcgcccca
tcttttcacctctttttaacgtgtaatgcccgatttttttgaaacttttaccaaatcttc
ccttttcaaaaaaatcctgaagtagtccaattttcagtttgatctatattgtccgttcct
tttctcacattcaccccatcactttcctgtccgttgttgtgtcctttgtctgtgtgtatg
tctaccgatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGTGTGTGTCTTCGTTGTTGTG 570 21 14 Antisense
TTGTTGTGCTGTTCTCTGTTATTAC 215 707 31 Antisense
TGCTGTTCTCTGTTATTACGACCTC 559 581 37 Antisense
TCCTTCCCAATTTTCGATTTAACAT 582 589 60 Antisense
TGTGATGATGCTCAATGTTCCTCGC 437 555 105 Antisense
CATCTTTTCACCTCTTTTTAACGTG 123 213 132 Antisense
TAACGTGTAATGCCCGATTTTTTTG 383 639 150 Antisense
GTAGTCCAATTTTCAGTTTGATCTA 259 457 215 Antisense
GTTTGATCTATATTGTCCGTTCCTT 542 451 230 Antisense
TGTCCTTTGTCTGTGTGTATGTCTA 592 557 293 Antisense
TGTCTGTGTGTATGTCTACCGATTA 682 557 300 Antisense
Sequence Source Affymetrix Proprietary Database