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[174442_s_at]

Description CEC221_rc /REP_DB=TREMBL Accession /GB=C07221 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk108e11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 19      6grp_total > 34      4grp_total > 36      6grp_cgc > 44      6grp_high1_sub > De      6grp_cgc_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 158
(3)
P 		153.9
(2.5)
P 		132.9
(-0.2)
A 		111.1
(-3)
A 		47
B 163.9
(1.4)
M 		181.6
(2.4)
M 		81
(-3)
A 		193.7
(3)
P 		113
C 183.6
(2.9)
P 		185.5
(3)
A 		105.9
(-3)
P 		181.9
(2.7)
M 		80
avr 168.5
(2.5) 		173.7
(3) 		106.6
(-3) 		162.2
(2) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 173
(-0.2)
P 		230.9
(3)
P 		166.1
(-0.5)
P 		121.1
(-3)
A 		150.7
(-1.4)
A 		124.8
(-2.8)
A 		110
B 165.6
(0.9)
P 		198.2
(3)
P 		128.2
(-1.5)
P 		134.1
(-1.1)
P 		104.5
(-3)
P 		115.9
(-2.3)
A 		94
C 166.3
(0.1)
P 		197.9
(1.1)
P 		253
(3)
A 		75.7
(-3)
A 		116.5
(-1.6)
A 		97.9
(-2.2)
P 		177
avr 168.3
(0.5) 		209
(3) 		182.4
(1.4) 		110.3
(-3) 		123.9
(-2.2) 		112.9
(-2.8) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 57.5
(3)
P 		33.4
(-0.5)
P 		34.8
(-0.3)
A 		16.3
(-3)
A 		41
B 52.3
(3)
M 		44.8
(1.7)
M 		18.8
(-3)
A 		41.3
(1)
P 		34
C 60.8
(3)
P 		53.3
(1.5)
A 		36.9
(-1.8)
P 		30.7
(-3)
M 		30
avr 56.9
(3) 		43.8
(0.1) 		30.2
(-2.8) 		29.4
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 31.9
(-2.8)
P 		82.1
(3)
P 		36.2
(-2.3)
P 		30.7
(-3)
A 		45.5
(-1.2)
A 		30.4
(-3)
A 		52
B 57.6
(1.6)
P 		66
(3)
P 		31.1
(-3)
P 		35.5
(-2.2)
P 		42.5
(-1)
P 		43.2
(-0.9)
A 		35
C 61.7
(2.7)
P 		60.4
(2.5)
P 		64.4
(3)
A 		15.2
(-3)
A 		37.7
(-0.3)
A 		32.8
(-0.9)
P 		49
avr 50.4
(0.3) 		69.5
(3) 		43.9
(-0.6) 		27.1
(-3) 		41.9
(-0.9) 		35.5
(-1.8) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174442_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21459
Sequence Type Exemplar sequence
Representative Public ID CEC221 NCBI
Target Description CEC221_rc /REP_DB=TREMBL Accession /GB=C07221 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk108e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026105(11), NM_001026106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026105 NCBI Caenorhabditis elegans UNCoordinated family member (unc-30) (unc-30) mRNA, complete cds. 11/11 None
NM_001026106 NCBI Caenorhabditis elegans UNCoordinated family member (unc-30) (unc-30) mRNA, complete cds. 11/11 None
GENEFINDER00000043362 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13119184:13124225:1 11/11 None
B0564.10a ENSEMBL cdna:known chromosome:CEL140:IV:13119066:13124357:1 gene:B0564.10 11/11 A 
B0564.10b ENSEMBL cdna:known chromosome:CEL140:IV:13119184:13124225:1 gene:B0564.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13122286-13124282(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0564.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54882 Hypothetical protein B0564.10b [Caenorhabditis elegans] ref|NP_001021277.1| UNCoordinated family member (unc-30) [Caenorhabditis elegans] 1.0E-154
blast CAA97770 Hypothetical protein B0564.10a [Caenorhabditis elegans] ref|NP_001021276.1| UNCoordinated family member (unc-30) [Caenorhabditis elegans] sp|P52906|UNC30_CAEEL Homeobox protein unc-30 1.0E-152
blast AAA63155 homeodomain protein prf||2101290A UNC-30 protein 1.0E-150
blast CAE54882 Hypothetical protein B0564.10b [Caenorhabditis elegans] ref|NP_001021277.1| UNCoordinated family member (unc-30) [Caenorhabditis elegans] 1.0E-150
blast CAA97770 Hypothetical protein B0564.10a [Caenorhabditis elegans] ref|NP_001021276.1| UNCoordinated family member (unc-30) [Caenorhabditis elegans] sp|P52906|UNC30_CAEEL Homeobox protein unc-30 1.0E-150
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.99999999963992E-23
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999999819959E-24
Pfam IPR001356 EMBL-EBI Homeobox 4.6E-26
Sequence
Target Sequence 
>C. ELEGANS:174442_S_AT
tcaaacgattccaatgtctccaacgacggcgactagtcgattttcgactgctgcaaattt
ggcacctctaccaacagcccaagctgcattctccacatctgccacgtcatcaaacgacaa
gctcaaattaatggacggtctctcgaattccctttcctcatcgctcggccaaccttatca
accctgtcagtacagtggaccactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACGATTCCAATGTCTCCAACG 434 629 19 Antisense
GTCTCCAACGACGGCGACTAGTCGA 100 469 34 Antisense
GACTAGTCGATTTTCGACTGCTGCA 28 373 49 Antisense
GACTGCTGCAAATTTGGCACCTCTA 345 375 64 Antisense
CAAATTTGGCACCTCTACCAACAGC 428 193 72 Antisense
TACCAACAGCCCAAGCTGCATTCTC 686 649 87 Antisense
GCCACGTCATCAAACGACAAGCTCA 673 279 119 Antisense
AGCTCAAATTAATGGACGGTCTCTC 49 79 138 Antisense
TAATGGACGGTCTCTCGAATTCCCT 535 635 147 Antisense
ACCTTATCAACCCTGTCAGTACAGT 497 87 190 Antisense
ACCCTGTCAGTACAGTGGACCACTT 42 91 199 Antisense
Sequence Source Affymetrix Proprietary Database