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[174441_at]

Description C38046_rc /REP_DB=TREMBL Accession /GB=C38046 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk485h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 397.1
(3)
P 		251.5
(-1.1)
P 		249.8
(-1.2)
P 		185
(-3)
P 		212
B 461.7
(3)
P 		319.7
(-0.4)
P 		207.8
(-3)
P 		346.7
(0.3)
P 		254
C 458.1
(3)
P 		367.5
(0.3)
P 		258.6
(-3)
P 		346.7
(-0.4)
P 		200
avr 439
(3) 		312.9
(-0.8) 		238.7
(-3) 		292.8
(-1.4) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 472.7
(3)
P 		405.7
(1.3)
P 		278.9
(-1.8)
P 		230.8
(-3)
P 		302.1
(-1.2)
P 		246.1
(-2.6)
P 		242
B 432.5
(3)
P 		412.2
(2.4)
P 		282.3
(-1.6)
P 		314
(-0.7)
P 		238.3
(-3)
P 		295.1
(-1.2)
P 		194
C 365.6
(2.5)
P 		382
(3)
P 		331.8
(1.6)
P 		278.1
(0.1)
P 		226.3
(-1.3)
P 		163.6
(-3)
P 		218
avr 423.6
(3) 		400
(2.2) 		297.7
(-1) 		274.3
(-1.7) 		255.6
(-2.3) 		234.9
(-3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 144.6
(3)
P 		54.6
(-1.6)
P 		65.3
(-1)
P 		27.1
(-3)
P 		118
B 147.2
(3)
P 		79
(-1.1)
P 		48.2
(-3)
P 		73.9
(-1.4)
P 		99
C 151.7
(3)
P 		105.7
(0)
P 		90.1
(-1)
P 		58.5
(-3)
P 		93
avr 147.8
(3) 		79.8
(-1.3) 		67.9
(-2.1) 		53.2
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 87.1
(-1)
P 		144.3
(3)
P 		60.7
(-2.8)
P 		58.5
(-3)
P 		91.2
(-0.7)
P 		59.9
(-2.9)
P 		86
B 150.5
(3)
P 		137.2
(2)
P 		68.6
(-3)
P 		83.2
(-1.9)
P 		96.8
(-0.9)
P 		110
(0)
P 		82
C 135.5
(3)
P 		116.6
(1.6)
P 		84.5
(-0.8)
P 		55.9
(-2.9)
P 		73.2
(-1.6)
P 		54.8
(-3)
P 		81
avr 124.4
(2.3) 		132.7
(3) 		71.3
(-2.5) 		65.9
(-3) 		87.1
(-1.1) 		74.9
(-2.2) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22370
Sequence Type Exemplar sequence
Representative Public ID C38046 NCBI
Target Description C38046_rc /REP_DB=TREMBL Accession /GB=C38046 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk485h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C11G6.3 ENSEMBL cdna:known chromosome:CEL140:X:16340627:16345941:1 gene:C11G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16345585-16345867(+) 89.36 100.0
Public Domain and Genome References
Ensembl C11G6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94113 Hypothetical protein C11G6.3 [Caenorhabditis elegans] ref|NP_510658.1| C11G6.3 [Caenorhabditis elegans] 3.0E-51
blast CAE69978 Hypothetical protein CBG16376 [Caenorhabditis briggsae] 9.0E-33
blast CAE63407 Hypothetical protein CBG07847 [Caenorhabditis briggsae] 6.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.9E-19
Sequence
Target Sequence 
>C. ELEGANS:174441_AT
gtgattcgaatggtcaattttgtccgaacattgatcatcaaacttttttaccaatcaatt
aacttaaaaccgccataatcagagatcataagttctcgactagttttattatttaaaata
atacaaatattttgttatcatcatttgaatgaaaattgcccatcactcccaactttctcc
tcttaaatatactctagcctcaattgtcaagtctttcaacaaccgcaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTCGAATGGTCAATTTTGTCC 173 485 21 Antisense
AATTTTGTCCGAACATTGATCATCA 179 175 36 Antisense
GATCATCAAACTTTTTTACCAATCA 35 421 53 Antisense
TAAAACCGCCATAATCAGAGATCAT 687 639 85 Antisense
GATCATAAGTTCTCGACTAGTTTTA 514 419 104 Antisense
GAATGAAAATTGCCCATCACTCCCA 523 331 167 Antisense
TCCCAACTTTCTCCTCTTAAATATA 642 597 187 Antisense
CTCCTCTTAAATATACTCTAGCCTC 210 235 197 Antisense
ATATACTCTAGCCTCAATTGTCAAG 393 19 207 Antisense
CTAGCCTCAATTGTCAAGTCTTTCA 582 225 214 Antisense
CAAGTCTTTCAACAACCGCAATTTC 627 179 228 Antisense
Sequence Source Affymetrix Proprietary Database