[Home] | [Total List]

[174440_at]

Description C58962_rc /REP_DB=TREMBL Accession /GB=C58962 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384b11 : 3prime end, single read.
Cluster 6grp_total > 52      4grp_total > 11      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.5
(-2)
A 		5.4
(-2)
A 		2.7
(-3)
A 		18.9
(3)
A 		16
B 3
(0.4)
A 		3.6
(3)
A 		2.2
(-3)
A 		2.3
(-2.6)
A 		1
C 5.7
(-1.6)
A 		5.3
(-2.1)
A 		4.6
(-3)
A 		9.3
(3)
A 		5
avr 4.7
(-1.7) 		4.8
(-1.6) 		3.2
(-3) 		10.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.1
(1.9)
A 		3.2
(-0.7)
A 		5.9
(3)
A 		2.3
(-1.9)
A 		2.4
(-1.8)
A 		1.5
(-3)
A 		4
B 3.9
(-0.7)
A 		6.7
(3)
A 		6.6
(2.9)
A 		5.6
(1.5)
A 		3.4
(-1.4)
A 		2.2
(-3)
A 		5
C 2.2
(-3)
A 		5.5
(1.6)
A 		6.5
(3)
A 		5.5
(1.6)
A 		2.8
(-2.2)
A 		4.3
(-0.1)
A 		4
avr 3.7
(-1.3) 		5.1
(1) 		6.3
(3) 		4.5
(0) 		2.9
(-2.7) 		2.7
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2
(0.7)
A 		1.2
(-1.6)
A 		0.7
(-3)
A 		2.8
(3)
A 		2
B 1
(3)
A 		0.9
(1.8)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
C 1.9
(3)
A 		1.5
(-3)
A 		1.6
(-1.5)
A 		1.6
(-1.5)
A 		0
avr 1.6
(3) 		1.2
(-0.4) 		0.9
(-3) 		1.6
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(0.3)
A 		1.1
(1.7)
A 		1.3
(3)
A 		0.6
(-1.7)
A 		0.7
(-1)
A 		0.4
(-3)
A 		1
B 1.3
(-0.9)
A 		2.2
(3)
A 		1.6
(0.4)
A 		1.5
(-0)
A 		1.4
(-0.4)
A 		0.8
(-3)
A 		1
C 0.8
(-3)
A 		1.7
(3)
A 		1.7
(3)
A 		1.1
(-1)
A 		0.9
(-2.3)
A 		1.5
(1.7)
A 		1
avr 1
(-2.3) 		1.7
(3) 		1.5
(1.5) 		1.1
(-1.5) 		1
(-2.3) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20578
Sequence Type Exemplar sequence
Representative Public ID C58962 NCBI
Target Description C58962_rc /REP_DB=TREMBL Accession /GB=C58962 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C58962
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C58962 C58962_rc /REP_DB=TREMBL Accession /GB=C58962 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384b11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063489 11/11 Negative Strand Matching Probes A 
SNAP00000030619 11/11 Negative Strand Matching Probes None
GENEFINDER00000030624 11/11 Negative Strand Matching Probes None
T07D4.3 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8880423-8880703(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174440_AT
gacattgcagatgccacgtcacacatcacagatcctgcaccaagagcagttccaagaata
agcactttggcaatgacaggctcaattggcatacgagcgagcatttttccgagacttgtc
aattctaaattacgatcaagagctcccatcgcttgtaacactgcttcactttcgacgacc
atatcatacggtggaggttgaagagcctttccaaggaattcaccgacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTGCAGATGCCACGTCACACA 167 371 32 Antisense
AGATGCCACGTCACACATCACAGAT 295 67 40 Antisense
TAAGCACTTTGGCAATGACAGGCTC 171 625 90 Antisense
AATGACAGGCTCAATTGGCATACGA 401 161 103 Antisense
GGCATACGAGCGAGCATTTTTCCGA 366 537 119 Antisense
GAGCATTTTTCCGAGACTTGTCAAT 254 389 130 Antisense
TTACGATCAAGAGCTCCCATCGCTT 123 683 161 Antisense
ATCGCTTGTAACACTGCTTCACTTT 375 37 179 Antisense
CACTTTCGACGACCATATCATACGG 78 197 198 Antisense
GGAGGTTGAAGAGCCTTTCCAAGGA 84 515 224 Antisense
GCCTTTCCAAGGAATTCACCGACGG 495 269 236 Antisense
Sequence Source Affymetrix Proprietary Database