[Home] | [Total List]

[174439_at]

Description CEC2094_rc /REP_DB=TREMBL Accession /GB=C11209 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165h8 : 3prime end, single read.
Cluster 6grp_total > 59      4grp_total > 44      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3.8
(-2.4)
A 		13.7
(3)
A 		2.6
(-3)
A 		4.6
(-1.9)
A 		11
B 19.6
(3)
A 		1.9
(-2.7)
A 		2.1
(-2.7)
A 		1.1
(-3)
A 		19
C 5.5
(-2.9)
A 		28.5
(3)
A 		5.1
(-3)
A 		8.2
(-2.2)
A 		23
avr 9.6
(0.3) 		14.7
(3) 		3.3
(-3) 		4.6
(-2.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 3
(-2.7)
A 		6.7
(-1.6)
A 		2.2
(-3)
A 		4.6
(-2.2)
A 		20.9
(3)
A 		7.1
(-1.4)
A 		19
B 34.9
(0.1)
A 		2.3
(-2.9)
A 		1.1
(-3)
A 		5.2
(-2.6)
A 		17.9
(-1.4)
A 		66.1
(3)
A 		65
C 7.4
(-1.8)
A 		11
(-0.9)
A 		2.9
(-3)
A 		25.9
(3)
A 		3.1
(-2.9)
A 		19.9
(1.4)
A 		23
avr 15.1
(-0.3) 		6.7
(-2) 		2.1
(-3) 		11.9
(-1) 		14
(-0.5) 		31
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.4
(-1.2)
A 		3
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2
B 6.3
(3)
A 		0.5
(-2.7)
A 		0.5
(-2.7)
A 		0.2
(-3)
A 		6
C 1.8
(-2.6)
A 		8.2
(3)
A 		1.8
(-2.6)
A 		1.4
(-3)
A 		7
avr 3.2
(1.6) 		3.9
(3) 		1
(-2.6) 		0.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.4
(-1)
A 		0.5
(-3)
A 		1.2
(-2.3)
A 		6.3
(3)
A 		1.7
(-1.8)
A 		6
B 12.1
(-0.1)
A 		0.8
(-2.9)
A 		0.3
(-3)
A 		1.4
(-2.7)
A 		7.3
(-1.3)
A 		24.7
(3)
A 		24
C 2.8
(-0.9)
A 		3.4
(-0.3)
A 		0.7
(-3)
A 		5.2
(1.5)
A 		1
(-2.7)
A 		6.7
(3)
A 		6
avr 5.1
(-0.4) 		2.2
(-2) 		0.5
(-3) 		2.6
(-1.8) 		4.9
(-0.5) 		11
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21731
Sequence Type Exemplar sequence
Representative Public ID CEC2094 NCBI
Target Description CEC2094_rc /REP_DB=TREMBL Accession /GB=C11209 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC2094
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC2094 CEC2094_rc /REP_DB=TREMBL Accession /GB=C11209 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165h8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072668 11/11 Negative Strand Matching Probes A 
ZC513.6 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8033429-8033728(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174439_AT
tcaagtttagtttcagagcctgcgagagatggggggagcgagcgtgctttctatatgaca
ggaacaaattgcgcgcgttattatagttagtatgggacataaaaacgtatggcaatttga
caaaatgtataaatagatggggaaggaggtggttattcaccacaattcaaggtgcttggc
aatgtccatggcaagttgatcaagtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTTTAGTTTCAGAGCCTGCGA 361 625 53 Antisense
GAGCCTGCGAGAGATGGGGGGAGCG 127 385 68 Antisense
GAGATGGGGGGAGCGAGCGTGCTTT 598 393 78 Antisense
GCGAGCGTGCTTTCTATATGACAGG 647 289 90 Antisense
GACAGGAACAAATTGCGCGCGTTAT 490 369 109 Antisense
AATTGCGCGCGTTATTATAGTTAGT 53 177 119 Antisense
GATGGGGAAGGAGGTGGTTATTCAC 604 407 188 Antisense
GGAGGTGGTTATTCACCACAATTCA 321 515 197 Antisense
TTCACCACAATTCAAGGTGCTTGGC 493 677 208 Antisense
AGGTGCTTGGCAATGTCCATGGCAA 402 55 222 Antisense
GTCCATGGCAAGTTGATCAAGTCCA 309 477 236 Antisense
Sequence Source Affymetrix Proprietary Database