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[174438_at] microtubule-associated protein 1 like

Description C34561_rc /REP_DB=TREMBL Accession /GB=C34561 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk404b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 38      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 47      6grp_total > 39      4grp_total > 12      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7424
1 2 3 4 range
A 4875.7
(-0.3)
P 		3155.6
(-2.1)
P 		2306.7
(-3)
P 		8087.1
(3)
P 		5780
B 5275.2
(-0.5)
P 		3245.6
(-2.1)
P 		2183.1
(-3)
P 		9607
(3)
P 		7424
C 4603.5
(-1)
P 		3385.9
(-2)
P 		2198.2
(-3)
P 		9472.9
(3)
P 		7275
avr 4918.1
(-0.6) 		3262.4
(-2.1) 		2229.3
(-3) 		9055.7
(3) 		6826

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2748
1 2 3 4 5 6 range
A 5342.5
(3)
P 		3382.3
(-1.3)
P 		2594.6
(-3)
P 		2722.4
(-2.7)
P 		3780.3
(-0.4)
P 		4402.6
(0.9)
P 		2748
B 4891.3
(3)
P 		3498.6
(-1.2)
P 		2878
(-3)
P 		3596.7
(-0.9)
P 		3264.2
(-1.8)
P 		4252.8
(1.1)
P 		2013
C 4413.8
(3)
P 		3536.5
(-1)
P 		3086.8
(-3)
P 		3383.6
(-1.7)
P 		3329.5
(-1.9)
P 		3848.6
(0.4)
P 		1327
avr 4882.5
(3) 		3472.5
(-1.2) 		2853.1
(-3) 		3234.2
(-1.9) 		3458
(-1.2) 		4168
(0.9) 		2029
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1541
1 2 3 4 range
A 1775.2
(3)
P 		685
(-2.6)
P 		603
(-3)
P 		1183.8
(-0)
P 		1172
B 1682.2
(1.6)
P 		801.6
(-1.8)
P 		505.9
(-3)
P 		2047.3
(3)
P 		1541
C 1523.9
(2.5)
P 		973.5
(-1.5)
P 		766.1
(-3)
P 		1597.3
(3)
P 		831
avr 1660.4
(3) 		820
(-1.9) 		625
(-3) 		1609.5
(2.7) 		1035

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1137
1 2 3 4 5 6 range
A 984.8
(0.9)
P 		1202.9
(3)
P 		565
(-3)
P 		690.5
(-1.8)
P 		1140.7
(2.4)
P 		1071.9
(1.8)
P 		638
B 1701.9
(3)
P 		1164.5
(-0.2)
P 		698.9
(-3)
P 		952.6
(-1.5)
P 		1326.2
(0.8)
P 		1585.8
(2.3)
P 		1003
C 1636
(3)
P 		1079.1
(-0.5)
P 		785.6
(-2.3)
P 		680.4
(-3)
P 		1077.4
(-0.5)
P 		1288.4
(0.8)
P 		956
avr 1440.9
(3) 		1148.8
(0.7) 		683.2
(-3) 		774.5
(-2.3) 		1181.4
(0.9) 		1315.4
(2) 		758
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21392
Sequence Type Exemplar sequence
Representative Public ID C34561 NCBI
Target Description C34561_rc /REP_DB=TREMBL Accession /GB=C34561 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk404b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069634 NCBI Caenorhabditis elegans LC3, GABARAP and GATE-16 family member (lgg-2) (lgg-2) mRNA, complete cds. 11/11 None
ZK593.6 ENSEMBL cdna:known chromosome:CEL140:IV:10934089:10935875:-1 gene:ZK593.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10934185-10934519(-) 100.0 100.0
Public Domain and Genome References
Gene Title microtubule-associated protein 1 like
Gene Symbol lgg-2
Ensembl ZK593.6
Entrez Gene 177989 Entrez gene
SwissProt Q23536 EMBL-EBI
WormBase CE06627 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589766_S_AT similar to microtubule-associated protein 1 light chain 3 alpha cfa
CANINE:1583816_AT similar to microtubule-associated protein 1 light chain 3 alpha cfa
CANINE_2:CFA.8473.1.A1_S_AT similar to microtubule-associated protein 1 light chain 3 alpha cfa
CANINE_2:CFA.8473.1.A1_X_AT similar to microtubule-associated protein 1 light chain 3 alpha cfa
CANINE_2:CFA.8751.1.A1_AT similar to microtubule-associated protein 1 light chain 3 alpha cfa
CANINE_2:CFAAFFX.12207.1.S1_S_AT similar to microtubule-associated protein 1 light chain 3 alpha cfa
CHICKEN:GGA.3998.1.S1_AT similar to Zgc:77094 gga
CHICKEN:GGA.5041.1.S1_S_AT similar to Zgc:77094 gga
HG-U133_PLUS_2:232011_S_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U133B:232011_S_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U133_PLUS_2:224378_X_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U133B:224378_X_AT microtubule-associated protein 1 light chain 3 alpha hs
HU35KSUBC:RC_AA115533_AT microtubule-associated protein 1 light chain 3 alpha hs
U133_X3P:G13625770_3P_S_AT microtubule-associated protein 1 light chain 3 alpha hs
U133_X3P:HS.134707.1.S1_3P_S_AT microtubule-associated protein 1 light chain 3 alpha hs
U133_X3P:HS.134707.0.S1_3P_S_AT microtubule-associated protein 1 light chain 3 alpha hs
U133_X3P:232011_3P_S_AT microtubule-associated protein 1 light chain 3 alpha hs
U133_X3P:227219_3P_X_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U133_PLUS_2:227219_X_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U133B:227219_X_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U95B:44906_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U95B:52300_F_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U95B:52302_F_AT microtubule-associated protein 1 light chain 3 alpha hs
HG-U95C:59975_AT microtubule-associated protein 1 light chain 3 alpha hs
MU11KSUBA:AA271910_G_AT microtubule-associated protein 1 light chain 3 alpha mm
MU11KSUBA:AA271910_AT microtubule-associated protein 1 light chain 3 alpha mm
MG-U74AV2:97447_AT microtubule-associated protein 1 light chain 3 alpha mm
MG-U74CV2:169666_I_AT microtubule-associated protein 1 light chain 3 alpha mm
MOE430A:1451290_AT microtubule-associated protein 1 light chain 3 alpha mm
MOUSE430A_2:1451290_AT microtubule-associated protein 1 light chain 3 alpha mm
MOUSE430_2:1451290_AT microtubule-associated protein 1 light chain 3 alpha mm
MOE430B:1447883_X_AT microtubule-associated protein 1 light chain 3 alpha mm
MOUSE430_2:1447883_X_AT microtubule-associated protein 1 light chain 3 alpha mm
MU19KSUBA:TC19432_AT Microtubule-associated protein 1 light chain 3 alpha (Map1lc3a), mRNA mm
RAE230A:1371682_AT microtubule-associated protein 1 light chain 3 alpha rn
RAT230_2:1371682_AT microtubule-associated protein 1 light chain 3 alpha rn
RG-U34A:RC_AA891441_S_AT microtubule-associated protein 1 light chain 3 alpha rn
RG-U34C:RC_AI177372_AT microtubule-associated protein 1 light chain 3 alpha rn
Protein Similarities
Method ID Description E-Value
blast CAA93421 Hypothetical protein ZK593.6 [Caenorhabditis elegans] ref|NP_502035.1| LC3, GABARAP and GATE-16 family member (lgg-2) [Caenorhabditis elegans] sp|Q23536|LGG2_CAEEL Protein lgg-2 6.0E-63
blast CAE61962 Hypothetical protein CBG05962 [Caenorhabditis briggsae] 4.0E-62
blast XP_783653 PREDICTED: similar to Microtubule-associated proteins 1A/1B light chain 3B precursor (MAP1A/MAP1B LC3) (MAP1A/1B light chain 3) [Strongylocentrotus purpuratus] 6.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004241 EMBL-EBI Light chain 3 (LC3) 5.2E-76
Sequence
Target Sequence 
>C. ELEGANS:174438_AT
attcgcttacgttttcgtgtagtctttatgtgttccctcataactctttctccgcatttt
ccagcccgtttcttgaatttcttcatgtcttcttttcacaactgatcctctttcaacaaa
atttaaaccgtttacgattctgtgtacttggctagtctctaaagcccatagggactattt
tccttactgccctgaacattgaaatttaccgctatggactttctgactgcctagacggat
tcaattcaaaattattacatcttgttccatcgttactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGCTTACGTTTTCGTGTAGTCT 388 9 36 Antisense
TCGTGTAGTCTTTATGTGTTCCCTC 616 605 50 Antisense
CAGCCCGTTTCTTGAATTTCTTCAT 391 203 97 Antisense
GAATTTCTTCATGTCTTCTTTTCAC 671 325 110 Antisense
TTTTCACAACTGATCCTCTTTCAAC 120 677 128 Antisense
GATTCTGTGTACTTGGCTAGTCTCT 223 433 171 Antisense
GCCCATAGGGACTATTTTCCTTACT 139 185 199 Antisense
TTTCCTTACTGCCCTGAACATTGAA 443 669 214 Antisense
TTACCGCTATGGACTTTCTGACTGC 301 683 241 Antisense
TTCTGACTGCCTAGACGGATTCAAT 150 695 256 Antisense
ATTACATCTTGTTCCATCGTTACTT 96 13 289 Antisense
Sequence Source Affymetrix Proprietary Database