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[174437_at]

Description C59631_rc /REP_DB=TREMBL Accession /GB=C59631 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 96      6grp_total > 88      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 34.7
(-2.8)
M 		21.4
(-3)
A 		30.9
(-2.8)
P 		370.8
(3)
P 		349
B 17.3
(-2.8)
A 		1.2
(-3)
A 		2.7
(-3)
A 		500.1
(3)
P 		499
C 20.5
(-2.8)
A 		4
(-3)
A 		11.8
(-2.9)
A 		471.7
(3)
P 		468
avr 24.2
(-2.8) 		8.9
(-3) 		15.1
(-2.9) 		447.5
(3) 		439

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 41
(-1.9)
P 		17.6
(-3)
A 		77.2
(-0.2)
P 		25.3
(-2.6)
A 		145.4
(3)
P 		68.8
(-0.6)
P 		128
B 50.2
(-3)
P 		62.7
(-2.5)
P 		95.4
(-1.3)
P 		68
(-2.3)
P 		130.5
(0)
P 		210.1
(3)
P 		160
C 23
(-3)
P 		47.1
(-1.8)
P 		42.6
(-2.1)
A 		61
(-1.2)
P 		41.6
(-2.1)
P 		147.7
(3)
P 		125
avr 38.1
(-3) 		42.5
(-2.7) 		71.7
(-1.1) 		51.4
(-2.2) 		105.8
(0.9) 		142.2
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 12.6
(-2)
M 		4.7
(-3)
A 		8.1
(-2.6)
P 		54.3
(3)
P 		50
B 5.5
(-2.7)
A 		0.3
(-3)
A 		0.6
(-3)
A 		106.6
(3)
P 		106
C 6.8
(-2.6)
A 		1.2
(-3)
A 		4.1
(-2.8)
A 		79.5
(3)
P 		78
avr 8.3
(-2.5) 		2.1
(-3) 		4.3
(-2.8) 		80.1
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 7.6
(-2.8)
P 		6.3
(-3)
A 		16.8
(-1.3)
P 		6.4
(-3)
A 		43.9
(3)
P 		16.7
(-1.3)
P 		38
B 17.5
(-3)
P 		20.9
(-2.7)
P 		23.2
(-2.4)
P 		18
(-3)
P 		53
(0.5)
P 		78.3
(3)
P 		61
C 8.5
(-3)
P 		14.4
(-2.1)
P 		10.8
(-2.7)
A 		12.3
(-2.4)
P 		13.4
(-2.3)
P 		49.4
(3)
P 		41
avr 11.2
(-3) 		13.9
(-2.6) 		16.9
(-2.1) 		12.2
(-2.8) 		36.8
(1.2) 		48.1
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21025
Sequence Type Exemplar sequence
Representative Public ID C59631 NCBI
Target Description C59631_rc /REP_DB=TREMBL Accession /GB=C59631 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59631
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59631 C59631_rc /REP_DB=TREMBL Accession /GB=C59631 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e12 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066431 11/11 Negative Strand Matching Probes A 
GENEFINDER00000040918 11/11 Negative Strand Matching Probes None
SNAP00000040914 11/11 Negative Strand Matching Probes None
F10E9.12 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8325060-8325339(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174437_AT
tttccatcgtaacaagcggtttccgatgagcagtccgtgtcaatagagcatctttggatt
aatggaagatatggaatattatccggagtagttgggatttcatcgaattctttggatttt
tgtagaactgcttctagtggtagcttatcatcaatttcttcttttggagactcttcggat
gatggaatgtgaatttccgattcagtttcattatgtgattcttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCATCGTAACAAGCGGTTTCCG 668 625 18 Antisense
AGCGGTTTCCGATGAGCAGTCCGTG 46 83 32 Antisense
GCAGTCCGTGTCAATAGAGCATCTT 541 311 47 Antisense
GTTGGGATTTCATCGAATTCTTTGG 304 435 108 Antisense
TTTGGATTTTTGTAGAACTGCTTCT 408 665 128 Antisense
GAACTGCTTCTAGTGGTAGCTTATC 60 349 142 Antisense
GGTAGCTTATCATCAATTTCTTCTT 404 505 156 Antisense
CAATTTCTTCTTTTGGAGACTCTTC 200 181 169 Antisense
GAGACTCTTCGGATGATGGAATGTG 112 393 184 Antisense
GAATGTGAATTTCCGATTCAGTTTC 242 333 202 Antisense
TCAGTTTCATTATGTGATTCTTCAG 43 623 219 Antisense
Sequence Source Affymetrix Proprietary Database