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[174436_at]

Description CEK007G5R_rc /REP_DB=TREMBL Accession /GB=D28015 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 20      6grp_total > 17      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 1124.4
(3)
P 		698.3
(-2)
P 		775.8
(-1.1)
P 		608.9
(-3)
P 		516
B 1008.4
(3)
P 		695
(-2)
P 		634
(-3)
P 		720.7
(-1.6)
P 		374
C 955.5
(3)
P 		841.3
(1.1)
P 		879.3
(1.7)
P 		598.1
(-3)
P 		357
avr 1029.4
(3) 		744.9
(-1.4) 		763
(-1.1) 		642.6
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1805
1 2 3 4 5 6 range
A 2244.1
(3)
P 		969.2
(-1.2)
P 		625.5
(-2.4)
P 		439.3
(-3)
P 		1020.6
(-1.1)
P 		677.1
(-2.2)
P 		1805
B 1562.8
(3)
P 		936.9
(-1.6)
P 		737.9
(-3)
P 		1046.6
(-0.8)
P 		852
(-2.2)
P 		1144.3
(-0)
P 		825
C 1256.2
(3)
P 		1222.6
(2.7)
P 		871.7
(-0.2)
P 		528.2
(-3)
P 		717.8
(-1.4)
P 		603.5
(-2.4)
P 		728
avr 1687.7
(3) 		1042.9
(-0.8) 		745
(-2.6) 		671.4
(-3) 		863.5
(-1.9) 		808.3
(-2.2) 		1016
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 409.4
(3)
P 		151.6
(-1.8)
P 		202.8
(-0.9)
P 		89.1
(-3)
P 		320
B 321.6
(3)
P 		171.7
(-2.1)
P 		146.9
(-3)
P 		153.6
(-2.8)
P 		175
C 316.3
(3)
P 		241.9
(0.9)
P 		306.5
(2.7)
P 		100.8
(-3)
P 		216
avr 349.1
(3) 		188.4
(-1.1) 		218.7
(-0.3) 		114.5
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 413.7
(3)
P 		344.7
(1.6)
P 		136.2
(-2.5)
P 		111.4
(-3)
P 		308
(0.9)
P 		164.8
(-1.9)
P 		302
B 543.8
(3)
P 		311.9
(-0.8)
P 		179.2
(-3)
P 		277.2
(-1.4)
P 		346.2
(-0.3)
P 		426.7
(1.1)
P 		365
C 465.6
(3)
P 		373.1
(1.5)
P 		221.9
(-1.1)
P 		106.2
(-3)
P 		232.3
(-0.9)
P 		202
(-1.4)
P 		359
avr 474.4
(3) 		343.2
(0.5) 		179.1
(-2.7) 		164.9
(-3) 		295.5
(-0.5) 		264.5
(-1.1) 		310
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21395
Sequence Type Exemplar sequence
Representative Public ID CEK007G5R NCBI
Target Description CEK007G5R_rc /REP_DB=TREMBL Accession /GB=D28015 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070041(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070041 NCBI Caenorhabditis elegans F07C6.4b (F07C6.4) mRNA, complete cds. 10/11 None
F07C6.4b.1 ENSEMBL cdna:known chromosome:CEL140:IV:12817031:12830191:1 gene:F07C6.4 10/11 None
F07C6.4b.2 ENSEMBL cdna:known chromosome:CEL140:IV:12817339:12830070:1 gene:F07C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178235 3 1 NM_070041 174436_at (10), 183521_at (9)
NM_070042 183521_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12829718-12830066(+) 100.0 100.0
Public Domain and Genome References
Ensembl F07C6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03204 Hypothetical protein F07C6.4b [Caenorhabditis elegans] emb|CAA93486.2| Hypothetical protein F07C6.4b [Caenorhabditis elegans] ref|NP_502442.2| F07C6.4b [Caenorhabditis elegans] 0.0
blast CAB03207 Hypothetical protein F07C6.4c [Caenorhabditis elegans] emb|CAA93488.2| Hypothetical protein F07C6.4c [Caenorhabditis elegans] ref|NP_502443.2| F07C6.4c [Caenorhabditis elegans] 0.0
blast CAB03206 Hypothetical protein F07C6.4a [Caenorhabditis elegans] emb|CAA93487.1| Hypothetical protein F07C6.4a [Caenorhabditis elegans] ref|NP_502441.1| F07C6.4a [Caenorhabditis elegans] 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:174436_AT
gacccctaaaaccattttgctcatcacttttcaattatttccccccaaccacaccaacat
gtgatatgattccgtttcacttatatgcttctcgttttgtttcagctccctccacgagac
gagttcgccgtcgacgggttcacaccgatttctagatcgcgttttctttttcttattcac
ctctcaacttgtgtgtgtctctctctctcttatagtaagagaaatttcagttcttgaatc
atatatatatatatttgagcgagtatttattttcgacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCCTAAAACCATTTTGCTCATC 650 381 52 Antisense
CCCCCAACCACACCAACATGTGATA 142 261 93 Antisense
GATTCCGTTTCACTTATATGCTTCT 376 433 119 Antisense
TATGCTTCTCGTTTTGTTTCAGCTC 95 657 135 Antisense
TCCACGAGACGAGTTCGCCGTCGAC 419 587 162 Antisense
TCACACCGATTTCTAGATCGCGTTT 3 627 191 Antisense
CTAGATCGCGTTTTCTTTTTCTTAT 397 225 203 Antisense
TTTCTTATTCACCTCTCAACTTGTG 246 671 220 Antisense
CACCTCTCAACTTGTGTGTGTCTCT 691 201 229 Antisense
TGTCTCTCTCTCTCTTATAGTAAGA 594 557 247 Antisense
TTGAGCGAGTATTTATTTTCGACGT 556 701 306 Antisense
Sequence Source Affymetrix Proprietary Database