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[174435_s_at]

Description C58771_rc /REP_DB=TREMBL Accession /GB=C58771 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk377e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 48      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 426.9
(-0.7)
P 		308.8
(-2.4)
A 		268.1
(-3)
P 		683.1
(3)
P 		415
B 318.1
(-1.7)
P 		294.3
(-2.2)
A 		252.3
(-3)
M 		566.8
(3)
P 		315
C 288.2
(-2.5)
P 		257.9
(-3)
A 		387
(-1)
P 		639.8
(3)
P 		382
avr 344.4
(-2) 		287
(-3) 		302.5
(-2.7) 		629.9
(3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 327.2
(0.5)
P 		328.5
(0.5)
P 		387.5
(3)
P 		262.4
(-2.3)
P 		245.4
(-3)
P 		286.5
(-1.3)
P 		142
B 446.6
(3)
P 		371.6
(0.4)
P 		353.8
(-0.2)
P 		270.4
(-3)
P 		421.2
(2.1)
P 		406.4
(1.6)
P 		176
C 364.2
(-0.4)
P 		319.4
(-1.9)
P 		288.1
(-3)
P 		351.1
(-0.9)
P 		401.6
(0.8)
P 		466.7
(3)
P 		179
avr 379.3
(2.5) 		339.8
(-0) 		343.1
(0.2) 		294.6
(-3) 		356.1
(1) 		386.5
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 155.4
(3)
P 		67
(-3)
A 		70.1
(-2.8)
P 		100
(-0.8)
P 		88
B 101.4
(1.1)
P 		72.7
(-1.6)
A 		58.5
(-3)
M 		120.8
(3)
P 		62
C 95.4
(-0.9)
P 		74.1
(-3)
A 		134.9
(3)
P 		107.9
(0.3)
P 		61
avr 117.4
(3) 		71.3
(-3) 		87.8
(-0.9) 		109.6
(2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 60.3
(-3)
P 		116.8
(3)
P 		84.4
(-0.4)
P 		66.6
(-2.3)
P 		74
(-1.5)
P 		69.7
(-2)
P 		57
B 155.4
(2.1)
P 		123.7
(0.1)
P 		85.9
(-2.1)
P 		71.6
(-3)
P 		171.1
(3)
P 		151.6
(1.8)
P 		100
C 135
(1.5)
P 		97.5
(-1.1)
P 		73.3
(-2.8)
P 		70.6
(-3)
P 		130
(1.2)
P 		156.2
(3)
P 		86
avr 116.9
(2) 		112.7
(1.6) 		81.2
(-1.8) 		69.6
(-3) 		125
(2.9) 		125.8
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174435_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21031
Sequence Type Exemplar sequence
Representative Public ID C58771 NCBI
Target Description C58771_rc /REP_DB=TREMBL Accession /GB=C58771 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk377e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066493 NCBI Caenorhabditis elegans C06E1.9 (C06E1.9) mRNA, complete cds. 11/11 A 
SNAP00000034822 ENSEMBL cdna:SNAP chromosome:CEL140:III:8606502:8609675:-1 11/11 None
GENEFINDER00000034826 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8606502:8609675:-1 11/11 None
C06E1.9 ENSEMBL cdna:known chromosome:CEL140:III:8606399:8609686:-1 gene:C06E1.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8606495-8606850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.9
Entrez Gene 176206 Entrez gene
SwissProt P34304 EMBL-EBI
WormBase CE24790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27929 Hypothetical protein C06E1.9 [Caenorhabditis elegans] ref|NP_498894.1| C06E1.9 [Caenorhabditis elegans] sp|P34304|YKQ9_CAEEL Hypothetical protein C06E1.9 in chromosome III 0.0
blast G88533 70.5K hpothetical protein - Caenorhabditis elegans 0.0
blast CAE69280 Hypothetical protein CBG15334 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174435_S_AT
ttctgcaccacctggtttatctcaaccacctccatatcaaggatcccgtggtggacgtgg
aggtcgtggagcccgaggtggcaatcgtggtggagccccatctgcagatggatatactgg
aggacatgatcgtcaaatgaaagagaaacacaagtcggatatcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCACCACCTGGTTTATCTCAA 117 693 64 Antisense
TGCACCACCTGGTTTATCTCAACCA 274 577 67 Antisense
TCTCAACCACCTCCATATCAAGGAT 287 613 83 Antisense
ACCACCTCCATATCAAGGATCCCGT 575 85 88 Antisense
ATCAAGGATCCCGTGGTGGACGTGG 22 25 99 Antisense
AGCCCGAGGTGGCAATCGTGGTGGA 680 77 133 Antisense
GAGGTGGCAATCGTGGTGGAGCCCC 242 403 138 Antisense
GGTGGAGCCCCATCTGCAGATGGAT 293 499 152 Antisense
GGATATACTGGAGGACATGATCGTC 571 509 173 Antisense
GGAGGACATGATCGTCAAATGAAAG 337 513 182 Antisense
GAGAAACACAAGTCGGATATCAAGC 690 391 206 Antisense
Sequence Source Affymetrix Proprietary Database