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[174431_s_at] S.pombe protein C4G8.04 like

Description CEK004H9R_rc /REP_DB=TREMBL Accession /GB=D27846 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk4h9 : 3prime end, single read.
Cluster 6grp_total > 59      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 125.5
(-0.5)
A 		72.2
(-2.7)
A 		63.8
(-3)
A 		212.3
(3)
P 		149
B 122
(0.4)
A 		15
(-3)
A 		59.4
(-1.6)
A 		201.6
(3)
M 		187
C 146
(-0.1)
A 		55.8
(-3)
A 		62.3
(-2.8)
A 		240.2
(3)
P 		184
avr 131.2
(-0.1) 		47.7
(-3) 		61.8
(-2.5) 		218
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 132.7
(-0)
A 		106.8
(-2.5)
M 		102.1
(-3)
A 		159.9
(2.6)
A 		141.5
(0.8)
M 		164.1
(3)
P 		62
B 184.4
(3)
A 		107.2
(-3)
A 		119.1
(-2.1)
P 		127.4
(-1.4)
P 		177.6
(2.5)
A 		181.8
(2.8)
P 		77
C 176.9
(2)
A 		135.5
(-1.1)
M 		110.2
(-3)
A 		145.5
(-0.3)
P 		125.4
(-1.8)
A 		189.5
(3)
P 		79
avr 164.7
(1.8) 		116.5
(-2.5) 		110.5
(-3) 		144.3
(-0) 		148.2
(0.3) 		178.5
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 45.7
(3)
A 		15.7
(-3)
A 		16.7
(-2.8)
A 		31.1
(0.1)
P 		30
B 38.9
(2.4)
A 		3.7
(-3)
A 		13.8
(-1.5)
A 		43
(3)
M 		39
C 48.3
(3)
A 		16.1
(-3)
A 		21.7
(-2)
A 		40.5
(1.5)
P 		32
avr 44.3
(3) 		11.8
(-3) 		17.4
(-2) 		38.2
(1.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 24.5
(-2.3)
A 		38
(1.6)
M 		22.2
(-3)
A 		40.6
(2.4)
A 		42.7
(3)
M 		40
(2.2)
P 		21
B 64.2
(1.9)
A 		35.7
(-2.1)
A 		28.9
(-3)
P 		33.8
(-2.3)
P 		72.1
(3)
A 		67.8
(2.4)
P 		43
C 65.6
(3)
A 		41.3
(-0.9)
M 		28
(-3)
A 		29.3
(-2.8)
P 		40.6
(-1)
A 		63.4
(2.6)
P 		38
avr 51.4
(1.9) 		38.3
(-0.7) 		26.4
(-3) 		34.6
(-1.4) 		51.8
(2) 		57.1
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174431_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22373
Sequence Type Exemplar sequence
Representative Public ID CEK004H9R NCBI
Target Description CEK004H9R_rc /REP_DB=TREMBL Accession /GB=D27846 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk4h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077935 NCBI Caenorhabditis elegans C31E10.8 (C31E10.8) mRNA, complete cds. 11/11 None
GENEFINDER00000027036 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14003025:14011195:-1 11/11 None
C31E10.8 ENSEMBL cdna:known chromosome:CEL140:X:14002944:14011602:-1 gene:C31E10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027030 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14002966-14003780(-) 100.0 100.0
Public Domain and Genome References
Gene Title S.pombe protein C4G8.04 like
Ensembl C31E10.8
Entrez Gene 181511 Entrez gene
SwissProt Q93316 EMBL-EBI
WormBase CE31423 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7169 transmembrane receptor protein tyrosine kinase signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01733 Hypothetical protein C31E10.8 [Caenorhabditis elegans] ref|NP_510336.2| C31E10.8 [Caenorhabditis elegans] 0.0
blast CAE63048 Hypothetical protein CBG07319 [Caenorhabditis briggsae] 0.0
blast XP_788881 PREDICTED: similar to tbc1 domain family member 2 (XO622) [Strongylocentrotus purpuratus] 8.0E-83
blast XP_788881 PREDICTED: similar to tbc1 domain family member 2 (XO622) [Strongylocentrotus purpuratus] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.0E-39
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:174431_S_AT
gcgtcaggttgtccttgttcatgaaattgaaaatatcggagacttccgtcagaaagataa
tttctagcggcgagcaccacattcttacctgctctggagagtttggcgccgacgaagcag
tgttgctttggaggaaagatatttccacaaatctttggatcaatgatccagtaacccacg
aagttccaaacatacctccatcgtcaaaaacgtcctcttcaacaccagcttccattcaat
cattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCAGGTTGTCCTTGTTCATGAA 48 293 76 Antisense
GAAAATATCGGAGACTTCCGTCAGA 85 353 104 Antisense
TAATTTCTAGCGGCGAGCACCACAT 462 635 133 Antisense
CATTCTTACCTGCTCTGGAGAGTTT 460 215 155 Antisense
TCTGGAGAGTTTGGCGCCGACGAAG 631 607 168 Antisense
GCGCCGACGAAGCAGTGTTGCTTTG 549 287 181 Antisense
GATCAATGATCCAGTAACCCACGAA 541 421 233 Antisense
ACGAAGTTCCAAACATACCTCCATC 376 91 253 Antisense
CAAACATACCTCCATCGTCAAAAAC 73 189 262 Antisense
CATCGTCAAAAACGTCCTCTTCAAC 292 211 274 Antisense
ACACCAGCTTCCATTCAATCATTAT 559 109 297 Antisense
Sequence Source Affymetrix Proprietary Database