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[174430_at]

Description C58281_rc /REP_DB=TREMBL Accession /GB=C58281 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk364d10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 69      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_total > 49      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 273.4
(3)
P 		135.7
(-1.5)
P 		90.5
(-3)
P 		231.5
(1.6)
P 		183
B 326.5
(3)
P 		68.9
(-2.9)
P 		64.9
(-3)
P 		148.3
(-1.1)
P 		262
C 294.6
(3)
P 		118.9
(-1.7)
P 		69.1
(-3)
P 		173.2
(-0.2)
P 		226
avr 298.2
(3) 		107.8
(-2.1) 		74.8
(-3) 		184.3
(-0.1) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 97.4
(-1.4)
P 		59.7
(-3)
P 		61.3
(-2.9)
P 		60.1
(-3)
A 		201.9
(3)
P 		122.1
(-0.4)
P 		142
B 189.9
(1.9)
P 		163.4
(1)
P 		53.8
(-3)
A 		93.6
(-1.6)
P 		97.5
(-1.4)
P 		219.2
(3)
P 		165
C 139.2
(0.9)
P 		107.4
(-0.1)
P 		21.8
(-3)
A 		57.7
(-1.8)
A 		60.8
(-1.7)
A 		200.6
(3)
P 		179
avr 142.2
(1.3) 		110.2
(-0.1) 		45.6
(-3) 		70.5
(-1.9) 		120.1
(0.3) 		180.6
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 99.5
(3)
P 		29.5
(-2.5)
P 		23.7
(-3)
P 		33.9
(-2.2)
P 		76
B 104.1
(3)
P 		17
(-2.9)
P 		15
(-3)
P 		31.6
(-1.9)
P 		89
C 97.5
(3)
P 		34.2
(-2.2)
P 		24.1
(-3)
P 		29.2
(-2.6)
P 		73
avr 100.4
(3) 		26.9
(-2.5) 		20.9
(-3) 		31.6
(-2.2) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 18
(-2.4)
P 		21.2
(-2)
P 		13.4
(-3)
P 		15.2
(-2.8)
A 		60.9
(3)
P 		29.7
(-0.9)
P 		48
B 66.1
(1.6)
P 		54.4
(0.6)
P 		13.1
(-3)
A 		24.8
(-2)
P 		39.6
(-0.7)
P 		81.7
(3)
P 		69
C 51.6
(1.5)
P 		32.8
(-0.3)
P 		5.5
(-3)
A 		11.6
(-2.4)
A 		19.7
(-1.6)
A 		67.2
(3)
P 		62
avr 45.2
(1.2) 		36.1
(0.1) 		10.7
(-3) 		17.2
(-2.2) 		40.1
(0.6) 		59.5
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22365
Sequence Type Exemplar sequence
Representative Public ID C58281 NCBI
Target Description C58281_rc /REP_DB=TREMBL Accession /GB=C58281 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk364d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C58281
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C58281 C58281_rc /REP_DB=TREMBL Accession /GB=C58281 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk364d10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15584108-15584398(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174430_AT
atttatcattcgtaataacgccatgactgcgggtgtatgtgtttgagaggatcatttcac
cacgtacaatttgcaacagtgtttcccccaaatttttgtttcaatttttctgttctaaga
aaagcacagggtccgtccggtggtgacatggatacggaaagtgagagagaggagagttga
aatggagaaatgaaaaggcaatgtcgttttgtgtagaattcaaatttgtatagactgttt
ccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTATCATTCGTAATAACGCCATG 247 15 27 Antisense
TAACGCCATGACTGCGGGTGTATGT 159 637 42 Antisense
GCGGGTGTATGTGTTTGAGAGGATC 648 291 55 Antisense
TGAGAGGATCATTTCACCACGTACA 638 567 70 Antisense
ATTTCACCACGTACAATTTGCAACA 72 17 80 Antisense
TTTGCAACAGTGTTTCCCCCAAATT 164 669 96 Antisense
TAAGAAAAGCACAGGGTCCGTCCGG 239 571 142 Antisense
GTCCGTCCGGTGGTGACATGGATAC 248 475 157 Antisense
GGTGGTGACATGGATACGGAAAGTG 619 499 165 Antisense
GGCAATGTCGTTTTGTGTAGAATTC 168 535 223 Antisense
CAAATTTGTATAGACTGTTTCCCTT 276 191 247 Antisense
Sequence Source Affymetrix Proprietary Database