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[174429_at]

Description CEK001E6R_rc /REP_DB=TREMBL Accession /GB=D32671 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1e6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 73      4grp_high_8_8 > 42      6grp_total > 70      4grp_total > 53      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 169.7
(3)
P 		167.8
(2.8)
P 		141.4
(0.8)
P 		93.9
(-3)
A 		76
B 190.4
(3)
P 		144.7
(-0)
P 		140.5
(-0.3)
P 		99
(-3)
P 		91
C 160.6
(3)
P 		138.7
(0.8)
P 		121.7
(-0.9)
P 		100.5
(-3)
P 		60
avr 173.6
(3) 		150.4
(1.2) 		134.5
(-0.1) 		97.8
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 155.6
(0.4)
M 		187.6
(1.9)
P 		83.4
(-3)
P 		211
(3)
P 		157.1
(0.5)
P 		151.1
(0.2)
P 		128
B 110
(-3)
P 		110.7
(-2.9)
P 		152.3
(1.8)
P 		115.3
(-2.4)
P 		127.5
(-1)
P 		163.3
(3)
P 		53
C 154.6
(-0.7)
P 		141.1
(-1.8)
P 		201.2
(3)
P 		168.2
(0.4)
P 		125.9
(-3)
P 		128.7
(-2.8)
P 		75
avr 140.1
(-2.3) 		146.5
(-0.9) 		145.6
(-1.1) 		164.8
(3) 		136.8
(-3) 		147.7
(-0.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 61.8
(3)
P 		36.4
(-0.2)
P 		37
(-0.1)
P 		13.7
(-3)
A 		48
B 60.7
(3)
P 		35.7
(-0.8)
P 		32.6
(-1.3)
P 		21.1
(-3)
P 		40
C 53.2
(3)
P 		39.9
(0.8)
P 		42.4
(1.2)
P 		17
(-3)
P 		36
avr 58.6
(3) 		37.3
(-0.1) 		37.3
(-0.1) 		17.3
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 28.7
(-1.7)
M 		66.7
(3)
P 		18.2
(-3)
P 		53.5
(1.4)
P 		47.4
(0.6)
P 		36.8
(-0.7)
P 		49
B 38.3
(-1.5)
P 		36.9
(-1.7)
P 		37
(-1.7)
P 		30.5
(-3)
P 		51.8
(1.2)
P 		60.9
(3)
P 		30
C 57.3
(3)
P 		43.1
(-0.6)
P 		51.2
(1.4)
P 		33.8
(-3)
P 		40.7
(-1.2)
P 		43.1
(-0.6)
P 		24
avr 41.4
(-0.4) 		48.9
(3) 		35.5
(-3) 		39.3
(-1.3) 		46.6
(2) 		46.9
(2.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21546
Sequence Type Exemplar sequence
Representative Public ID CEK001E6R NCBI
Target Description CEK001E6R_rc /REP_DB=TREMBL Accession /GB=D32671 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067815 NCBI Caenorhabditis elegans Y69A2AR.16 (Y69A2AR.16) mRNA, complete cds. 11/11 A 
GENEFINDER00000018858 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2511504:2522062:1 11/11 None
Y69A2AR.16 ENSEMBL cdna:known chromosome:CEL140:IV:2504325:2530286:1 gene:Y69A2AR.16 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2515070-2518885(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.16
Entrez Gene 177039 Entrez gene
SwissProt Q95XI7 EMBL-EBI
WormBase CE27512 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258594_AT exportin-related at
CANINE:1589209_AT similar to Exportin-4 (Exp4) cfa
CANINE_2:CFA.12747.1.A1_S_AT similar to Exportin-4 (Exp4) cfa
CANINE_2:CFAAFFX.11709.1.S1_AT similar to Exportin-4 (Exp4) cfa
CHICKEN:GGA.13846.1.S1_S_AT exportin 4 gga
CHICKEN:GGAAFFX.10980.1.S1_S_AT exportin 4 gga
CHICKEN:GGAAFFX.11418.1.S1_AT exportin 4 gga
HG-FOCUS:218479_S_AT exportin 4 hs
HG-U133A:218479_S_AT exportin 4 hs
HG-U133_PLUS_2:218479_S_AT exportin 4 hs
HG-U133A_2:218479_S_AT exportin 4 hs
HU35KSUBB:RC_N49740_AT exportin 4 hs
HU35KSUBC:RC_AA418037_AT exportin 4 hs
U133_X3P:G11967998_3P_A_AT exportin 4 hs
U133_X3P:HS.117102.0.S2_3P_AT exportin 4 hs
HG-U133_PLUS_2:222649_AT exportin 4 hs
HG-U133B:222649_AT exportin 4 hs
HG-U95C:48741_AT exportin 4 hs
HG-U95C:61200_AT exportin 4 hs
HG-U95D:75909_AT exportin 4 hs
HG-U95D:85581_AT exportin 4 hs
HG-U133_PLUS_2:237243_AT Exportin 4 hs
HG-U133B:237243_AT Exportin 4 hs
HG-U95B:48319_AT Exportin 4 hs
HU35KSUBC:RC_AA279504_AT Exportin 4 hs
U133_X3P:HS.88629.0.A1_3P_AT Exportin 4 hs
MOUSE430A_2:1421054_AT exportin 4 mm
MOE430A:1421054_AT exportin 4 mm
MOUSE430_2:1421054_AT exportin 4 mm
MOE430A:1421055_AT exportin 4 mm
MOUSE430A_2:1421055_AT exportin 4 mm
MOUSE430_2:1421055_AT exportin 4 mm
MOE430B:1430797_AT exportin 4 mm
MOUSE430_2:1430797_AT exportin 4 mm
MOE430B:1442528_AT exportin 4 mm
MOUSE430_2:1442528_AT exportin 4 mm
MG-U74BV2:112721_AT Exportin 4 (Xpo4), mRNA mm
MOE430B:1440663_AT Exportin 4 (Xpo4), mRNA mm
MOUSE430_2:1440663_AT Exportin 4 (Xpo4), mRNA mm
MOE430B:1456396_AT Exportin 4 (Xpo4), mRNA mm
MOUSE430_2:1456396_AT Exportin 4 (Xpo4), mRNA mm
MU19KSUBC:TC38183_AT Exportin 4 (Xpo4), mRNA mm
MU19KSUBC:TC41187_AT Exportin 4 (Xpo4), mRNA mm
RG-U34C:RC_AI170652_AT exportin 4 (predicted) rn
RG-U34C:RC_AI072630_AT exportin 4 (predicted) rn
RG-U34C:RC_AI136233_S_AT exportin 4 (predicted) rn
RAE230B:1383296_A_AT exportin 4 (predicted) rn
RAT230_2:1383296_A_AT exportin 4 (predicted) rn
RAE230B:1385864_AT exportin 4 (predicted) rn
RAT230_2:1385864_AT exportin 4 (predicted) rn
RAE230B:1385428_AT exportin 4 (predicted) rn
RAT230_2:1385428_AT exportin 4 (predicted) rn
RAE230B:1396681_AT Exportin 4 (predicted) rn
RAT230_2:1396681_AT Exportin 4 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68560 Hypothetical protein Y69A2AR.16 [Caenorhabditis elegans] ref|NP_500216.1| Y69A2AR.16 [Caenorhabditis elegans] 0.0
blast CAE74685 Hypothetical protein CBG22497 [Caenorhabditis briggsae] 0.0
blast CAE74685 Hypothetical protein CBG22497 [Caenorhabditis briggsae] 1.0E-159
blast NP_071904 exportin 4 [Homo sapiens] 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:174429_AT
cgaggatcacacatcgctagcactgatctacgatgcaatcgtagttcttctacgtggccg
ctggcggacatgcttctcgtcagaagaagaagccgacgctgttgataatgaattagttaa
atggccgacgttaatgattgtcaatgcatttgtatcgaatcttcttgccccaccaaaagg
tacacggccagtggcaaaagatgaagatgatggagatgaagactcggaagatcggacatt
atttatggatctatttaatccgctcggagcgatgatttgctattcggttggagagtttat
ggagaatatggctacaaatcttcacacatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGATCACACATCGCTAGCACTG 98 251 17 Antisense
GCTAGCACTGATCTACGATGCAATC 132 303 32 Antisense
ATCGTAGTTCTTCTACGTGGCCGCT 206 21 54 Antisense
GCGGACATGCTTCTCGTCAGAAGAA 92 293 80 Antisense
GAAGCCGACGCTGTTGATAATGAAT 589 343 105 Antisense
CATTTGTATCGAATCTTCTTGCCCC 473 215 163 Antisense
TTCTTGCCCCACCAAAAGGTACACG 407 687 178 Antisense
AGACTCGGAAGATCGGACATTATTT 10 71 236 Antisense
GGATCTATTTAATCCGCTCGGAGCG 261 511 263 Antisense
GGAGCGATGATTTGCTATTCGGTTG 217 521 282 Antisense
ATGGCTACAAATCTTCACACATCCC 532 53 324 Antisense
Sequence Source Affymetrix Proprietary Database