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[174426_at]

Description CEK006G5R_rc /REP_DB=TREMBL Accession /GB=D27123 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 10      6grp_total > 26      4grp_total > 22      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 919
1 2 3 4 range
A 2184
(3)
P 		1265.5
(-3)
P 		1475.7
(-1.6)
P 		1847.6
(0.8)
P 		919
B 1961.9
(1.8)
P 		1781.4
(0.4)
P 		1352.7
(-3)
P 		2109.1
(3)
P 		756
C 1843
(2.6)
P 		1735.3
(1.5)
P 		1306.9
(-3)
P 		1880.7
(3)
P 		574
avr 1996.3
(3) 		1594.1
(-0.9) 		1378.4
(-3) 		1945.8
(2.5) 		618

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 912
1 2 3 4 5 6 range
A 1566.1
(1.5)
P 		1788.8
(3)
P 		907.4
(-2.8)
P 		877
(-3)
P 		1285.6
(-0.3)
P 		1700
(2.4)
P 		912
B 1630.7
(2.8)
P 		1656.3
(3)
P 		955.6
(-2.9)
P 		1184.4
(-1)
P 		939.9
(-3)
P 		1122.9
(-1.5)
P 		716
C 1544.1
(2.7)
P 		1573.8
(3)
P 		1164.6
(-1.5)
P 		1045.7
(-2.8)
P 		1256.8
(-0.5)
P 		1023
(-3)
P 		551
avr 1580.3
(2.2) 		1673
(3) 		1009.2
(-3) 		1035.7
(-2.8) 		1160.8
(-1.6) 		1282
(-0.5) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 795.2
(3)
P 		274.7
(-3)
P 		385.8
(-1.7)
P 		270.5
(-3)
P 		525
B 625.6
(3)
P 		440
(-0.6)
P 		313.5
(-3)
P 		449.4
(-0.4)
P 		312
C 610.1
(3)
P 		498.9
(0.7)
P 		455.5
(-0.2)
P 		317.1
(-3)
P 		293
avr 677
(3) 		404.5
(-1.9) 		384.9
(-2.3) 		345.7
(-3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 288.7
(-1.8)
P 		636.2
(3)
P 		197.6
(-3)
P 		222.4
(-2.7)
P 		387.9
(-0.4)
P 		413.9
(-0)
P 		439
B 567.4
(3)
P 		551.3
(2.7)
P 		232
(-3)
P 		313.7
(-1.5)
P 		381.9
(-0.3)
P 		418.7
(0.3)
P 		335
C 572.3
(3)
P 		480.2
(1.5)
P 		296.4
(-1.6)
P 		210.3
(-3)
P 		406.7
(0.3)
P 		342.5
(-0.8)
P 		362
avr 476.1
(1.5) 		555.9
(3) 		242
(-3) 		248.8
(-2.9) 		392.2
(-0.1) 		391.7
(-0.1) 		314
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21734
Sequence Type Exemplar sequence
Representative Public ID CEK006G5R NCBI
Target Description CEK006G5R_rc /REP_DB=TREMBL Accession /GB=D27123 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F13H6.1 ENSEMBL cdna:known chromosome:CEL140:V:6360071:6365591:1 gene:F13H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6365093-6365570(+) 100.0 100.0
Public Domain and Genome References
Ensembl F13H6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65884 Hypothetical protein F13H6.1 [Caenorhabditis elegans] ref|NP_504620.2| F13H6.1 [Caenorhabditis elegans] 0.0
blast CAE71867 Hypothetical protein CBG18919 [Caenorhabditis briggsae] 0.0
blast AAF46246 CG9650-PA, isoform A [Drosophila melanogaster] ref|NP_727175.2| CG9650-PA, isoform A [Drosophila melanogaster] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.5E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.8E-6
Sequence
Target Sequence 
>C. ELEGANS:174426_AT
caaccattactctttcgcagatacccccggtgattttgttgtacagaccctgtccctttc
ccccaatttgtcccgtgacctagttctcccatggaagtagtatttttagtccgactgata
gcccccttgtaccatttattatacatacatatatatataaatacgtccataccttcattt
attcccttattttattgctttctcattctctaccaacctcttaatattctagttgttttt
cattttagtcgctgatcctgcttttttgtctagatggaccatctttgtgttaactatctt
ccttttcgaagagattttcataaaggaaccatatttcattcaatttttctttcttcggtt
agctggtgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCATTACTCTTTCGCAGATACC 704 185 41 Antisense
GCAGATACCCCCGGTGATTTTGTTG 24 295 57 Antisense
ATTTTGTTGTACAGACCCTGTCCCT 131 13 73 Antisense
GTGACCTAGTTCTCCCATGGAAGTA 195 481 115 Antisense
TTTTTAGTCCGACTGATAGCCCCCT 261 675 143 Antisense
CATACCTTCATTTATTCCCTTATTT 94 215 208 Antisense
ATTTTATTGCTTTCTCATTCTCTAC 444 15 229 Antisense
TTCTCTACCAACCTCTTAATATTCT 270 691 246 Antisense
ATTTTAGTCGCTGATCCTGCTTTTT 319 15 282 Antisense
TTGTGTTAACTATCTTCCTTTTCGA 619 705 325 Antisense
TTCTTTCTTCGGTTAGCTGGTGTAC 90 689 387 Antisense
Sequence Source Affymetrix Proprietary Database