[Home] | [Total List]

[174425_at]

Description CEK007C8R_rc /REP_DB=TREMBL Accession /GB=D27994 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 01      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1230
1 2 3 4 range
A 2565
(3)
P 		1634.4
(-2.2)
P 		1486.5
(-3)
P 		2093.7
(0.4)
P 		1079
B 2716.2
(3)
P 		1791.4
(-1.8)
P 		1552.2
(-3)
P 		2072.4
(-0.3)
P 		1164
C 2587.5
(3)
P 		1808.2
(-2.1)
P 		1676
(-3)
P 		1992.5
(-0.9)
P 		912
avr 2622.9
(3) 		1744.7
(-2) 		1571.6
(-3) 		2052.9
(-0.3) 		1051

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2044
1 2 3 4 5 6 range
A 2995.7
(3)
P 		2350.7
(0.8)
P 		1575.2
(-1.7)
P 		1199.3
(-3)
P 		1907.8
(-0.6)
P 		1386.5
(-2.4)
P 		1796
B 3242.8
(3)
P 		2225.3
(-0.4)
P 		1459.8
(-3)
P 		1826.6
(-1.8)
P 		1553.9
(-2.7)
P 		1789.8
(-1.9)
P 		1783
C 2919.2
(3)
P 		2118.2
(0)
P 		1716.3
(-1.5)
P 		1367.7
(-2.8)
P 		1811.6
(-1.1)
P 		1307.7
(-3)
P 		1612
avr 3052.6
(3) 		2231.4
(-0.1) 		1583.8
(-2.5) 		1464.5
(-3) 		1757.8
(-1.9) 		1494.7
(-2.9) 		1588
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 627
1 2 3 4 range
A 933.9
(3)
P 		354.8
(-2.5)
P 		388.6
(-2.2)
P 		306.5
(-3)
P 		627
B 866.2
(3)
P 		442.4
(-2)
P 		359.7
(-3)
P 		441.6
(-2)
P 		507
C 856.5
(3)
P 		519.9
(-0.9)
P 		584.1
(-0.1)
P 		336
(-3)
P 		521
avr 885.5
(3) 		439
(-2.1) 		444.1
(-2.1) 		361.4
(-3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 552.2
(-0.2)
P 		836
(3)
P 		343
(-2.6)
P 		304.2
(-3)
P 		575.7
(0.1)
P 		337.6
(-2.6)
P 		532
B 1128.3
(3)
P 		740.7
(-0)
P 		354.5
(-3)
P 		483.8
(-2)
P 		631.3
(-0.9)
P 		667.4
(-0.6)
P 		774
C 1082
(3)
P 		646.3
(-0.2)
P 		436.8
(-1.8)
P 		275
(-3)
P 		586.2
(-0.7)
P 		437.8
(-1.8)
P 		807
avr 920.8
(3) 		741
(1.1) 		378.1
(-2.7) 		354.3
(-3) 		597.7
(-0.4) 		480.9
(-1.7) 		567
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20409
Sequence Type Exemplar sequence
Representative Public ID CEK007C8R NCBI
Target Description CEK007C8R_rc /REP_DB=TREMBL Accession /GB=D27994 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C01G8.9a ENSEMBL cdna:known chromosome:CEL140:I:5300984:5310917:-1 gene:C01G8.9 11/11 None
C01G8.9b ENSEMBL cdna:known chromosome:CEL140:I:5300984:5304788:-1 gene:C01G8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5301007-5301361(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01G8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37646 Hypothetical protein C01G8.9a [Caenorhabditis elegans] ref|NP_491562.2| C01G8.9a [Caenorhabditis elegans] 0.0
blast T29265 hypothetical protein C01G8.7 - Caenorhabditis elegans 0.0
blast CAE66945 Hypothetical protein CBG12337 [Caenorhabditis briggsae] 0.0
blast AAO38675 Hypothetical protein C01G8.9b [Caenorhabditis elegans] ref|NP_871823.1| C01G8.9b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.3.ARID domain All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain 4.99997305055738E-41
Pfam IPR001606 EMBL-EBI ARID (AT-rich interaction domain) protein 3.6E-55
Sequence
Target Sequence 
>C. ELEGANS:174425_AT
atttatgtgaaatgtcgcccatctgaaccattaatttatttattttcgttcttcccctcc
cccaaatcaacaacctcaaaatgttctcttcccgtgatttgaagatccatcaaatatatg
tataacacaaactttttgaaaaccacctctatgttatccacaaacgtttctttttcttta
aatttccactcctcattctacaaaaaaatcattaaaatttcggttattgattgactttta
ggctccttattgatccacaccccccttcactgaacccttttatgtttggttatcatcacg
ata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTATGTGAAATGTCGCCCATCTG 575 13 33 Antisense
GTCGCCCATCTGAACCATTAATTTA 515 475 46 Antisense
CCCCCAAATCAACAACCTCAAAATG 282 233 91 Antisense
AATGTTCTCTTCCCGTGATTTGAAG 641 163 112 Antisense
TTCCCGTGATTTGAAGATCCATCAA 295 697 121 Antisense
GAAAACCACCTCTATGTTATCCACA 186 355 170 Antisense
TATGTTATCCACAAACGTTTCTTTT 186 657 182 Antisense
TTTCCACTCCTCATTCTACAAAAAA 450 669 215 Antisense
ATTGATTGACTTTTAGGCTCCTTAT 273 3 258 Antisense
CCTTCACTGAACCCTTTTATGTTTG 447 269 296 Antisense
TTTATGTTTGGTTATCATCACGATA 459 673 311 Antisense
Sequence Source Affymetrix Proprietary Database