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[174423_at]

Description CEK006G1R_rc /REP_DB=TREMBL Accession /GB=D27968 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g1 : 3prime end, single read.
Cluster 6grp_total > 09      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1.7
(-3)
A 		8
(-0.3)
A 		3.4
(-2.3)
A 		15.5
(3)
A 		14
B 27
(3)
A 		18.4
(0.7)
A 		4.6
(-3)
A 		6.5
(-2.5)
A 		22
C 38
(3)
A 		9.7
(-2.4)
A 		8.8
(-2.5)
A 		6.3
(-3)
A 		32
avr 22.2
(3) 		12
(-0.7) 		5.6
(-3) 		9.4
(-1.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.9
(-1.2)
A 		4
(-2.2)
A 		4.6
(-2)
A 		19.4
(3)
A 		7.3
(-1.1)
A 		1.6
(-3)
A 		18
B 13.7
(3)
A 		1.6
(-2.6)
A 		12
(2.2)
A 		3.3
(-1.8)
A 		0.8
(-3)
A 		8.6
(0.6)
A 		13
C 20.8
(3)
A 		6.1
(-1.6)
A 		5.6
(-1.8)
A 		1.6
(-3)
A 		19.2
(2.5)
A 		7.8
(-1.1)
A 		19
avr 13.8
(3) 		3.9
(-3) 		7.4
(-0.9) 		8.1
(-0.5) 		9.1
(0.2) 		6
(-1.7) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.6
(-3)
A 		1.7
(0.9)
A 		0.9
(-1.9)
A 		2.3
(3)
A 		2
B 8.6
(3)
A 		4.5
(-0.3)
A 		1.1
(-3)
A 		1.4
(-2.8)
A 		8
C 12.6
(3)
A 		2.8
(-2.1)
A 		3.1
(-2)
A 		1.1
(-3)
A 		12
avr 7.3
(3) 		3
(-1.5) 		1.7
(-2.9) 		1.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-1.8)
A 		1.4
(-1.7)
A 		1
(-2.2)
A 		4.9
(3)
A 		2.2
(-0.6)
A 		0.4
(-3)
A 		5
B 4.8
(3)
A 		0.5
(-2.7)
A 		2.9
(0.5)
A 		0.9
(-2.2)
A 		0.3
(-3)
A 		3.2
(0.9)
A 		5
C 7.7
(3)
A 		1.8
(-1.8)
A 		1.4
(-2.1)
A 		0.3
(-3)
A 		6.2
(1.8)
A 		2.6
(-1.1)
A 		7
avr 4.6
(3) 		1.2
(-3) 		1.8
(-1.9) 		2
(-1.6) 		2.9
(0) 		2.1
(-1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20499
Sequence Type Exemplar sequence
Representative Public ID CEK006G1R NCBI
Target Description CEK006G1R_rc /REP_DB=TREMBL Accession /GB=D27968 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK006G1R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK006G1R CEK006G1R_rc /REP_DB=TREMBL Accession /GB=D27968 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g1 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11290432-11290783(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174423_AT
aatttaatcattgtccgggaggagtacacggccgagaatcccaaacctcattttcagcgc
gaaattcgaattagatagagaagaggttaatttttgcattttaaagcattataaaatccg
tttaaaacattttttgggattttctgcttacaaaaatgtatattttacatctttaaaatt
ttacaacggcaaaaaactttgaggtcaaaattatctccactgctactccgttctggctct
gaactcattatttcggaattaaaatggaacgaaaaccattgttaagcgtcaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTAATCATTGTCCGGGAGGAGT 400 173 20 Antisense
GTCCGGGAGGAGTACACGGCCGAGA 358 475 32 Antisense
GAGGAGTACACGGCCGAGAATCCCA 58 405 38 Antisense
CCAAACCTCATTTTCAGCGCGAAAT 35 277 60 Antisense
AACCTCATTTTCAGCGCGAAATTCG 629 145 63 Antisense
GAGAAGAGGTTAATTTTTGCATTTT 147 391 97 Antisense
TTTGGGATTTTCTGCTTACAAAAAT 313 665 152 Antisense
GTCAAAATTATCTCCACTGCTACTC 277 465 223 Antisense
TCCGTTCTGGCTCTGAACTCATTAT 146 593 246 Antisense
GGCTCTGAACTCATTATTTCGGAAT 352 539 254 Antisense
GAAAACCATTGTTAAGCGTCAAGAG 471 353 290 Antisense
Sequence Source Affymetrix Proprietary Database