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[174421_at]

Description C53412_rc /REP_DB=TREMBL Accession /GB=C53412 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk259g1 : 3prime end, single read.
Cluster 6grp_total > 28      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 42.5
(2.7)
A 		6.4
(-3)
A 		44.5
(3)
A 		31.7
(1)
A 		38
B 45.5
(3)
P 		29.8
(-3)
A 		31.5
(-2.4)
A 		45.3
(2.9)
P 		16
C 24.8
(-3)
A 		37.7
(0.4)
A 		47.7
(3)
A 		27.8
(-2.2)
A 		23
avr 37.6
(1.7) 		24.6
(-3) 		41.2
(3) 		34.9
(0.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 50.4
(3)
A 		10.5
(-3)
A 		25.6
(-0.7)
A 		20
(-1.6)
A 		39.4
(1.3)
A 		13.6
(-2.5)
A 		40
B 28.9
(3)
A 		24.8
(2.1)
A 		1.7
(-3)
A 		2
(-2.9)
A 		6.5
(-1.9)
A 		13.1
(-0.5)
A 		27
C 16.3
(3)
A 		3.5
(-2.6)
A 		5.1
(-1.9)
A 		2.7
(-3)
A 		3.7
(-2.6)
A 		10.2
(0.3)
A 		14
avr 31.9
(3) 		12.9
(-1.8) 		10.8
(-2.3) 		8.2
(-3) 		16.5
(-0.9) 		12.3
(-2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.5
(3)
A 		1.4
(-3)
A 		11.6
(1.3)
A 		4.6
(-1.6)
A 		14
B 14.5
(3)
P 		7.4
(-2.9)
A 		7.3
(-3)
A 		9.7
(-1)
P 		7
C 8.2
(-1.2)
A 		10.8
(0.1)
A 		16.6
(3)
A 		4.7
(-3)
A 		12
avr 12.7
(3) 		6.5
(-2.8) 		11.8
(2.2) 		6.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.3
(1.2)
A 		3.7
(-2.7)
A 		5.6
(-1.4)
A 		5.1
(-1.7)
A 		11.9
(3)
A 		3.3
(-3)
A 		9
B 10
(3)
A 		8.3
(1.9)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		2.6
(-1.6)
A 		4.9
(-0.2)
A 		10
C 6
(3)
A 		1.1
(-2.4)
A 		1.3
(-2.2)
A 		0.6
(-3)
A 		1.2
(-2.3)
A 		3.4
(0.1)
A 		5
avr 8.4
(3) 		4.4
(-0.8) 		2.4
(-2.7) 		2.1
(-3) 		5.2
(-0) 		3.9
(-1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22412
Sequence Type Exemplar sequence
Representative Public ID C53412 NCBI
Target Description C53412_rc /REP_DB=TREMBL Accession /GB=C53412 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk259g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002084 ENSEMBL cdna:SNAP chromosome:CEL140:X:3961908:3963872:-1 11/11 None
C16B8.2 ENSEMBL cdna:known chromosome:CEL140:X:3961871:3965812:-1 gene:C16B8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3961881-3962093(-) 100.0 100.0
Public Domain and Genome References
Ensembl C16B8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82619 Hypothetical protein C16B8.2 [Caenorhabditis elegans] ref|NP_508685.2| C16B8.2 [Caenorhabditis elegans] 0.0
blast CAE68506 Hypothetical protein CBG14317 [Caenorhabditis briggsae] 0.0
blast CAE68506 Hypothetical protein CBG14317 [Caenorhabditis briggsae] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:174421_AT
gaacgagtgtcaaacagatagcaactgtggtattcaaactgtatgctgcacgaagaaatg
gtgcgacagaagtaataattgtggtaccggaaagttttgtctgacaagttgctcgtcgac
aaaacttacctttttaccatctgcaaatcatgctgaaagcgtaattgatatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGAGTGTCAAACAGATAGCAAC 1 349 14 Antisense
GATAGCAACTGTGGTATTCAAACTG 180 425 30 Antisense
GGTATTCAAACTGTATGCTGCACGA 593 505 42 Antisense
GAAGAAATGGTGCGACAGAAGTAAT 375 339 65 Antisense
CAGAAGTAATAATTGTGGTACCGGA 116 159 80 Antisense
TGGTACCGGAAAGTTTTGTCTGACA 289 551 95 Antisense
TTTGTCTGACAAGTTGCTCGTCGAC 276 667 109 Antisense
GTTGCTCGTCGACAAAACTTACCTT 327 435 121 Antisense
ACTTACCTTTTTACCATCTGCAAAT 407 101 137 Antisense
TTACCATCTGCAAATCATGCTGAAA 501 681 147 Antisense
CATGCTGAAAGCGTAATTGATATTA 227 211 162 Antisense
Sequence Source Affymetrix Proprietary Database