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[174420_at]

Description C56886_rc /REP_DB=TREMBL Accession /GB=C56886 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 02      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3625
1 2 3 4 range
A 748.5
(-2.8)
P 		878.5
(-2.6)
P 		627.8
(-3)
P 		4176.2
(3)
P 		3548
B 908.3
(-2.8)
P 		927.6
(-2.8)
P 		802
(-3)
P 		4252.7
(3)
P 		3451
C 991.4
(-2.4)
P 		896.1
(-2.7)
P 		776
(-3)
P 		2881
(3)
P 		2105
avr 882.7
(-2.7) 		900.7
(-2.7) 		735.3
(-3) 		3770
(3) 		3035

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1271
1 2 3 4 5 6 range
A 434.5
(-3)
P 		689.7
(-1.8)
P 		1705.5
(3)
P 		1037
(-0.2)
P 		665.1
(-1.9)
P 		558.6
(-2.4)
P 		1271
B 620.3
(-3)
P 		1018.8
(-0.6)
P 		1610.4
(3)
P 		967.7
(-0.9)
P 		1042.7
(-0.4)
P 		694.6
(-2.5)
P 		990
C 595.4
(-3)
P 		803.1
(0.6)
P 		940.9
(3)
P 		834.5
(1.2)
P 		708.1
(-1)
P 		817.9
(0.9)
P 		346
avr 550.1
(-3) 		837.2
(-1) 		1418.9
(3) 		946.4
(-0.3) 		805.3
(-1.2) 		690.4
(-2) 		869
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 742
1 2 3 4 range
A 272.5
(-1.5)
P 		190.7
(-2.6)
P 		164.1
(-3)
P 		611.3
(3)
P 		447
B 289.7
(-2.1)
P 		229.1
(-2.6)
P 		185.8
(-3)
P 		906.3
(3)
P 		721
C 328.2
(-1.1)
P 		257.6
(-3)
P 		270.4
(-2.7)
P 		485.8
(3)
P 		228
avr 296.8
(-1.8) 		225.8
(-2.8) 		206.8
(-3) 		667.8
(3) 		461

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 80.1
(-3)
P 		245.3
(0.4)
P 		371.4
(3)
P 		263
(0.8)
P 		200.7
(-0.5)
P 		136
(-1.8)
P 		291
B 215.8
(-3)
P 		339.1
(0.6)
P 		391
(2.1)
P 		256.3
(-1.8)
P 		423.6
(3)
P 		259
(-1.8)
P 		208
C 220.7
(-0)
P 		245
(1.4)
P 		239.5
(1.1)
P 		167.8
(-3)
P 		229.1
(0.5)
P 		273.8
(3)
P 		106
avr 172.2
(-3) 		276.5
(0.9) 		334
(3) 		229
(-0.9) 		284.5
(1.2) 		222.9
(-1.1) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20326
Sequence Type Exemplar sequence
Representative Public ID C56886 NCBI
Target Description C56886_rc /REP_DB=TREMBL Accession /GB=C56886 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026257 NCBI Caenorhabditis elegans F29C6.1 (F29C6.1) mRNA, complete cds. 11/11 None
F29C6.1 ENSEMBL cdna:known chromosome:CEL140:I:10587540:10589011:1 gene:F29C6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000333 3/11 Cross Hyb Matching Probes None
GENEFINDER00000000344 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10588652-10588932(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29C6.1
Entrez Gene 172947 Entrez gene
SwissProt Q7YSU0 EMBL-EBI
WormBase CE13912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17965 Hypothetical protein F29C6.1 [Caenorhabditis elegans] emb|CAE17796.1| Hypothetical protein F29C6.1 [Caenorhabditis elegans] ref|NP_001021428.1| F29C6.1 [Caenorhabditis elegans] 5.0E-92
blast CAE58982 Hypothetical protein CBG02255 [Caenorhabditis briggsae] emb|CAE56913.1| Hypothetical protein CBG24756 [Caenorhabditis briggsae] 9.0E-62
Sequence
Target Sequence 
>C. ELEGANS:174420_AT
gtgaaagatcagccgaaaaccagtgaacctgcgaaacaagaagcaacgacagaagctgct
ggccgatgatttttcagtttccaaaccgagtgatgccaatttctagccatatcagtctgt
ttcttattattttgtgtagttgaacacctaataaatacaattccaaatgttttgcaattg
ttagagtgtggaatacggcaaaaattatgtacttgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAAGATCAGCCGAAAACCAGTG 5 483 45 Antisense
GAAAACCAGTGAACCTGCGAAACAA 54 355 59 Antisense
GCAACGACAGAAGCTGCTGGCCGAT 266 321 87 Antisense
GAAGCTGCTGGCCGATGATTTTTCA 421 343 96 Antisense
GATGATTTTTCAGTTTCCAAACCGA 299 407 109 Antisense
CAGTTTCCAAACCGAGTGATGCCAA 632 205 119 Antisense
ACCGAGTGATGCCAATTTCTAGCCA 408 87 129 Antisense
TTTCTAGCCATATCAGTCTGTTTCT 75 673 144 Antisense
TATCAGTCTGTTTCTTATTATTTTG 358 659 154 Antisense
GTTTTGCAATTGTTAGAGTGTGGAA 32 449 213 Antisense
TACGGCAAAAATTATGTACTTGTCA 342 647 238 Antisense
Sequence Source Affymetrix Proprietary Database