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[174418_at]

Description C55918_rc /REP_DB=TREMBL Accession /GB=C55918 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk231e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 299.6
(2.2)
P 		155.5
(-1.7)
P 		110.1
(-3)
P 		326.9
(3)
P 		217
B 268.5
(1.1)
P 		138.3
(-2.5)
P 		121.3
(-3)
P 		339.3
(3)
P 		218
C 308.4
(2)
P 		168.5
(-1.5)
P 		111.7
(-3)
P 		345.9
(3)
P 		234
avr 292.2
(1.8) 		154.1
(-1.9) 		114.4
(-3) 		337.4
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 303.1
(3)
P 		186.7
(-1.3)
P 		238.8
(0.6)
P 		141.4
(-3)
P 		201.6
(-0.8)
P 		158.2
(-2.4)
P 		162
B 360
(3)
P 		229.7
(-0.4)
P 		132.3
(-3)
P 		187.5
(-1.5)
P 		166.8
(-2.1)
P 		178.7
(-1.8)
P 		228
C 292.3
(3)
P 		271.7
(2.2)
P 		134
(-2.8)
P 		188.2
(-0.8)
P 		161.5
(-1.8)
P 		128.8
(-3)
P 		164
avr 318.5
(3) 		229.4
(-0.3) 		168.4
(-2.5) 		172.4
(-2.4) 		176.6
(-2.2) 		155.2
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 109.1
(3)
P 		33.7
(-2.6)
P 		28.8
(-3)
P 		47.9
(-1.6)
P 		80
B 85.6
(3)
P 		34.2
(-2.4)
P 		28.1
(-3)
P 		72.3
(1.6)
P 		58
C 102.1
(3)
P 		48.4
(-2.1)
P 		38.9
(-3)
P 		58.3
(-1.2)
P 		63
avr 98.9
(3) 		38.8
(-2.4) 		31.9
(-3) 		59.5
(-0.5) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 55.9
(0.9)
P 		66.4
(3)
P 		52
(0.2)
P 		35.9
(-3)
P 		60.8
(1.9)
P 		38.5
(-2.5)
P 		31
B 125.3
(3)
P 		76.5
(-0.1)
P 		32.1
(-3)
P 		49.7
(-1.9)
P 		67.8
(-0.7)
P 		66.6
(-0.8)
P 		93
C 108.3
(3)
P 		82.9
(0.9)
P 		34.1
(-3)
P 		37.9
(-2.7)
P 		52.2
(-1.5)
P 		43.1
(-2.3)
P 		74
avr 96.5
(3) 		75.3
(0.8) 		39.4
(-3) 		41.2
(-2.8) 		60.3
(-0.8) 		49.4
(-1.9) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21671
Sequence Type Exemplar sequence
Representative Public ID C55918 NCBI
Target Description C55918_rc /REP_DB=TREMBL Accession /GB=C55918 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk231e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072345(11), NM_072346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072345 NCBI Caenorhabditis elegans T19F4.1b (T19F4.1) mRNA, complete cds. 11/11 A 
NM_072346 NCBI Caenorhabditis elegans T19F4.1a (T19F4.1) mRNA, complete cds. 11/11 None
T19F4.1b ENSEMBL cdna:known chromosome:CEL140:V:6872903:6876376:1 gene:T19F4.1 11/11 A 
T19F4.1a ENSEMBL cdna:known chromosome:CEL140:V:6872903:6876337:1 gene:T19F4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028426 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028430 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6876074-6876328(+) 100.0 100.0
Public Domain and Genome References
Ensembl T19F4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02525 Hypothetical protein T19F4.1b [Caenorhabditis elegans] ref|NP_504746.1| T19F4.1b [Caenorhabditis elegans] 0.0
blast CAE71965 Hypothetical protein CBG19036 [Caenorhabditis briggsae] 0.0
blast T29683 hypothetical protein T19F4.1 - Caenorhabditis elegans 0.0
blast AAL02524 Hypothetical protein T19F4.1a [Caenorhabditis elegans] ref|NP_504747.1| T19F4.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-7
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.9E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504746.1 7 10-29,41-63,78-100,130-147,182-204,225-247,267-289
NP_504747.1 7 10-29,41-63,78-100,130-147,182-204,225-247,267-289
T19F4.1b 7 10-29,41-63,78-100,130-147,182-204,225-247,267-289
T19F4.1a 7 10-29,41-63,78-100,130-147,182-204,225-247,267-289
Sequence
Target Sequence 
>C. ELEGANS:174418_AT
gtagaacatcgtgggatgcctgaaatcactatcacttttagtgaggaccttccagatgga
gaacccgattctccatgtcaaccatgctagattttatcattttcttttcacttgtagctt
ttttgtttgtctctttattattattatcgccaatttcttcctatgcaccgatctttccaa
gctttcttccatacgaacaattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGAACATCGTGGGATGCCTGAAA 570 455 13 Antisense
GGATGCCTGAAATCACTATCACTTT 343 513 26 Antisense
TCACTTTTAGTGAGGACCTTCCAGA 141 627 44 Antisense
CTTCCAGATGGAGAACCCGATTCTC 258 217 61 Antisense
GATTCTCCATGTCAACCATGCTAGA 640 431 79 Antisense
ATGTCAACCATGCTAGATTTTATCA 706 47 87 Antisense
ATCATTTTCTTTTCACTTGTAGCTT 80 31 108 Antisense
GTAGCTTTTTTGTTTGTCTCTTTAT 619 457 126 Antisense
ATTATCGCCAATTTCTTCCTATGCA 679 13 155 Antisense
TTTCCAAGCTTTCTTCCATACGAAC 255 669 186 Antisense
GCTTTCTTCCATACGAACAATTCCA 266 305 193 Antisense
Sequence Source Affymetrix Proprietary Database