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[174416_at]

Description C54572_rc /REP_DB=TREMBL Accession /GB=C54572 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk396h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 45      4grp_total > 06      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 101.5
(0.5)
P 		57.2
(-2.8)
P 		55.2
(-3)
A 		135.1
(3)
P 		80
B 105.1
(0.9)
P 		65.7
(-3)
P 		112.2
(1.6)
P 		126
(3)
P 		60
C 88.5
(2.5)
P 		89.2
(3)
P 		86.2
(1)
P 		80.2
(-3)
P 		9
avr 98.4
(0.9) 		70.7
(-3) 		84.5
(-1.1) 		113.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 80.7
(-3)
P 		125
(0.8)
P 		151.2
(3)
P 		95.7
(-1.7)
P 		107.1
(-0.8)
P 		81.4
(-2.9)
P 		71
B 135
(0.6)
P 		165.2
(3)
P 		105.2
(-1.8)
P 		90.7
(-3)
P 		94.5
(-2.7)
P 		130.7
(0.2)
P 		75
C 112
(0.2)
P 		140.9
(3)
P 		134.6
(2.4)
P 		79.2
(-3)
P 		85.6
(-2.4)
P 		118.1
(0.8)
P 		62
avr 109.2
(-0.7) 		143.7
(3) 		130.3
(1.5) 		88.5
(-3) 		95.7
(-2.2) 		110.1
(-0.7) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 36.9
(3)
P 		12.4
(-3)
P 		14.4
(-2.5)
A 		19.8
(-1.2)
P 		25
B 33.5
(3)
P 		16.2
(-3)
P 		26
(0.4)
P 		26.9
(0.7)
P 		17
C 29.3
(2.7)
P 		25.6
(1.4)
P 		30
(3)
P 		13.5
(-3)
P 		17
avr 33.2
(3) 		18.1
(-3) 		23.5
(-0.9) 		20.1
(-2.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.9
(-3)
P 		44.5
(3)
P 		32.9
(0.6)
P 		24.3
(-1.1)
P 		32.3
(0.5)
P 		19.8
(-2)
P 		30
B 47
(1.5)
P 		55
(3)
P 		25.6
(-2.7)
P 		24
(-3)
P 		38.4
(-0.2)
P 		48.7
(1.8)
P 		31
C 41.5
(2.7)
P 		43
(3)
P 		34.3
(1.1)
P 		15.9
(-3)
P 		27.7
(-0.4)
P 		39.5
(2.2)
P 		27
avr 34.5
(0) 		47.5
(3) 		30.9
(-0.8) 		21.4
(-3) 		32.8
(-0.4) 		36
(0.4) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22401
Sequence Type Exemplar sequence
Representative Public ID C54572 NCBI
Target Description C54572_rc /REP_DB=TREMBL Accession /GB=C54572 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk396h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075768 NCBI Caenorhabditis elegans F56F10.4 (F56F10.4) mRNA, complete cds. 11/11 A 
F56F10.4.1 ENSEMBL cdna:known chromosome:CEL140:X:864948:871338:-1 gene:F56F10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010363 8/11 Cross Hyb Matching Probes None
F56F10.4.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:865003-865677(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F10.4
Entrez Gene 180435 Entrez gene
SwissProt Q20894 EMBL-EBI
WormBase CE28466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36853 Hypothetical protein F56F10.4 [Caenorhabditis elegans] ref|NP_508169.1| F56F10.4 [Caenorhabditis elegans] 0.0
blast CAE63609 Hypothetical protein CBG08100 [Caenorhabditis briggsae] 0.0
blast XP_420130 PREDICTED: similar to lethal giant larvae homolog 2; lethal giant larvae (Drosophila) homolog 2 [Gallus gallus] 6.0E-40
Sequence
Target Sequence 
>C. ELEGANS:174416_AT
ggaagtttatagacccaatcgacgtaatggcactaaactcgagttgtttatcacgtgatg
gtgacgtggcattcctcatcaaatcctccgaactacagcgaagtacggtgaatttgaact
ttcgcggttggagcagtacgcacaagtcatagatgcattttttttaaaaatcgttttcct
gttgatatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTTTATAGACCCAATCGACGT 613 529 72 Antisense
AGACCCAATCGACGTAATGGCACTA 701 69 82 Antisense
GTAATGGCACTAAACTCGAGTTGTT 114 463 95 Antisense
ACTCGAGTTGTTTATCACGTGATGG 449 97 108 Antisense
TGATGGTGACGTGGCATTCCTCATC 437 567 127 Antisense
CAAATCCTCCGAACTACAGCGAAGT 392 193 151 Antisense
GTACGGTGAATTTGAACTTTCGCGG 545 455 174 Antisense
GAACTTTCGCGGTTGGAGCAGTACG 176 349 187 Antisense
GGAGCAGTACGCACAAGTCATAGAT 223 521 201 Antisense
AAGTCATAGATGCATTTTTTTTAAA 424 151 215 Antisense
AAAAATCGTTTTCCTGTTGATATAT 238 129 237 Antisense
Sequence Source Affymetrix Proprietary Database