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[174414_at]

Description C55839_rc /REP_DB=TREMBL Accession /GB=C55839 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk223d5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 32      6grp_total > 06      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 135.1
(3)
P 		33.1
(-3)
P 		60.4
(-1.4)
P 		58.1
(-1.5)
P 		102
B 137.6
(3)
P 		52.8
(-2)
A 		38.4
(-2.8)
P 		35.2
(-3)
P 		102
C 132.3
(3)
P 		57.5
(-1.9)
M 		63.1
(-1.6)
P 		41.3
(-3)
A 		91
avr 135
(3) 		47.8
(-2.8) 		54
(-2.4) 		44.9
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 169.5
(3)
P 		90.7
(-0.5)
P 		56.5
(-2)
P 		71.6
(-1.3)
P 		68.8
(-1.4)
P 		33
(-3)
A 		137
B 101.9
(3)
P 		67.1
(-0.1)
P 		57.6
(-1)
P 		79.8
(1)
P 		35.4
(-3)
P 		50.5
(-1.6)
P 		67
C 171.2
(3)
P 		114.2
(0.6)
P 		71.5
(-1.1)
P 		26.2
(-3)
A 		59.9
(-1.6)
P 		59
(-1.6)
P 		145
avr 147.5
(3) 		90.7
(-0.4) 		61.9
(-2.1) 		59.2
(-2.3) 		54.7
(-2.6) 		47.5
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 49.2
(3)
P 		7.2
(-3)
P 		15.8
(-1.8)
P 		8.5
(-2.8)
P 		42
B 43.9
(3)
P 		13
(-2.1)
A 		8.9
(-2.8)
P 		7.5
(-3)
P 		36
C 43.8
(3)
P 		16.5
(-1.5)
M 		22
(-0.6)
P 		7
(-3)
A 		37
avr 45.6
(3) 		12.2
(-2.3) 		15.6
(-1.7) 		7.7
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 31.2
(2.7)
P 		32.3
(3)
P 		12.3
(-1.9)
P 		18.2
(-0.5)
P 		20.8
(0.2)
P 		8
(-3)
A 		24
B 35.5
(3)
P 		22.3
(-0.7)
P 		14
(-3)
P 		21.1
(-1)
P 		14.4
(-2.9)
P 		18.8
(-1.7)
P 		22
C 63.5
(3)
P 		34.8
(0)
P 		18.2
(-1.7)
P 		5.3
(-3)
A 		19.4
(-1.5)
P 		19.8
(-1.5)
P 		58
avr 43.4
(3) 		29.8
(0.1) 		14.8
(-3) 		14.9
(-3) 		18.2
(-2.3) 		15.5
(-2.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20701
Sequence Type Exemplar sequence
Representative Public ID C55839 NCBI
Target Description C55839_rc /REP_DB=TREMBL Accession /GB=C55839 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk223d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F35D11.11a ENSEMBL cdna:known chromosome:CEL140:II:4628905:4637616:-1 gene:F35D11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4628913-4629193(-) 84.29 100.0
Public Domain and Genome References
Ensembl F35D11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68757 Hypothetical protein F35D11.11a [Caenorhabditis elegans] ref|NP_494821.1| F35D11.11a [Caenorhabditis elegans] 0.0
blast AAL02511 Hypothetical protein F35D11.11c [Caenorhabditis elegans] ref|NP_494820.1| F35D11.11c [Caenorhabditis elegans] 0.0
blast AAL02510 Hypothetical protein F35D11.11b [Caenorhabditis elegans] ref|NP_494819.1| F35D11.11b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174414_AT
tctttctccctttttgtttatacattgccaactaattttattttagctttaatactaata
ataatattatttaaaaccatatctagtccataatttcctagtcatttagatctcatccat
ctcccccggttgtcattccctattgaaccctgtcctttttccactgaaatcttcaattct
tatgtgttttcctgtttaactaggtttcgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCTCCCTTTTTGTTTATACAT 688 615 38 Antisense
CTCCCTTTTTGTTTATACATTGCCA 640 231 43 Antisense
TACATTGCCAACTAATTTTATTTTA 340 645 58 Antisense
AACCATATCTAGTCCATAATTTCCT 482 147 112 Antisense
AGTCCATAATTTCCTAGTCATTTAG 235 49 122 Antisense
TAGTCATTTAGATCTCATCCATCTC 20 655 136 Antisense
CGGTTGTCATTCCCTATTGAACCCT 517 243 164 Antisense
TTCCACTGAAATCTTCAATTCTTAT 604 699 196 Antisense
AATCTTCAATTCTTATGTGTTTTCC 72 171 205 Antisense
CAATTCTTATGTGTTTTCCTGTTTA 152 181 211 Antisense
TTTCCTGTTTAACTAGGTTTCGCAT 611 667 225 Antisense
Sequence Source Affymetrix Proprietary Database