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[174413_at]

Description C58824_rc /REP_DB=TREMBL Accession /GB=C58824 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 40      6grp_total > 37      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1594
1 2 3 4 range
A 1266.6
(1.2)
P 		701.6
(-2)
P 		519.7
(-3)
P 		1577.5
(3)
P 		1058
B 1182.9
(-0.1)
P 		590.8
(-2.3)
P 		403.2
(-3)
P 		1997.1
(3)
P 		1594
C 1068.8
(0.1)
P 		759
(-1.7)
P 		522.4
(-3)
P 		1578.7
(3)
P 		1056
avr 1172.8
(0.4) 		683.8
(-2) 		481.8
(-3) 		1717.8
(3) 		1236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 795
1 2 3 4 5 6 range
A 850.7
(3)
P 		673.4
(0.9)
P 		501.1
(-1.2)
P 		378
(-2.6)
P 		347.8
(-3)
P 		726.5
(1.5)
P 		503
B 1007.2
(3)
P 		751.8
(1)
P 		399.8
(-1.9)
P 		527.8
(-0.8)
P 		258.5
(-3)
P 		687.7
(0.4)
P 		749
C 1053.9
(3)
P 		769.5
(0.3)
P 		460.6
(-2.6)
P 		447.5
(-2.7)
P 		416.7
(-3)
P 		576.7
(-1.5)
P 		637
avr 970.6
(3) 		731.6
(0.7) 		453.8
(-1.9) 		451.1
(-2) 		341
(-3) 		663.6
(0.1) 		630
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 461.2
(3)
P 		152.3
(-2.7)
P 		135.9
(-3)
P 		230.9
(-1.2)
P 		325
B 377.2
(2.1)
P 		145.9
(-2.1)
P 		93.4
(-3)
P 		425.6
(3)
P 		332
C 353.8
(3)
P 		218.2
(-1.7)
P 		182.1
(-3)
P 		266.2
(-0.1)
P 		172
avr 397.4
(3) 		172.1
(-2.2) 		137.1
(-3) 		307.6
(0.9) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 156.8
(-0.5)
P 		239.5
(3)
P 		109.1
(-2.4)
P 		95.9
(-3)
P 		105
(-2.6)
P 		176.9
(0.4)
P 		144
B 350.5
(3)
P 		250.2
(0.6)
P 		97.1
(-3)
P 		139.8
(-2)
P 		105
(-2.8)
P 		256.4
(0.8)
P 		253
C 390.6
(3)
P 		234.8
(-0.1)
P 		117.2
(-2.5)
P 		90
(-3)
P 		134.9
(-2.1)
P 		193.1
(-0.9)
P 		301
avr 299.3
(3) 		241.5
(1.2) 		107.8
(-3) 		108.6
(-3) 		115
(-2.8) 		208.8
(0.2) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21682
Sequence Type Exemplar sequence
Representative Public ID C58824 NCBI
Target Description C58824_rc /REP_DB=TREMBL Accession /GB=C58824 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C58824
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C58824 C58824_rc /REP_DB=TREMBL Accession /GB=C58824 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384g4 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6224896-6225250(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174413_AT
acttccccccgttaatgataatgattcagtagccaattttgttttcttttccttctagaa
tctctgaaaatcctctcattgtcttccccacaggttcaatccgtattcatttgcgccgcg
cgcaaccctccatcttttccaaccagctttacccatttcagtaagtgccccgtcactctt
accattctctttcacatcctccactctcttcaatttgcttttaccgtttctagatttgat
tctgtagactaatatgcgagtgtgagtgagattttgcgagtgtgtgagtttgactgcgcg
ccgaacagcctaaatctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCCCCCGTTAATGATAATGAT 505 101 16 Antisense
GTTTTCTTTTCCTTCTAGAATCTCT 217 449 56 Antisense
TCTGAAAATCCTCTCATTGTCTTCC 257 607 78 Antisense
TTCCCCACAGGTTCAATCCGTATTC 629 653 99 Antisense
GTTCAATCCGTATTCATTTGCGCCG 645 445 109 Antisense
TTACCCATTTCAGTAAGTGCCCCGT 280 681 164 Antisense
CCACTCTCTTCAATTTGCTTTTACC 61 275 216 Antisense
TGCTTTTACCGTTTCTAGATTTGAT 152 563 231 Antisense
GTGAGTGAGATTTTGCGAGTGTGTG 432 483 277 Antisense
CGAGTGTGTGAGTTTGACTGCGCGC 47 249 292 Antisense
CGCGCCGAACAGCCTAAATCTGAAA 241 257 312 Antisense
Sequence Source Affymetrix Proprietary Database