[Home] | [Total List]

[174411_s_at]

Description C55148_rc /REP_DB=TREMBL Accession /GB=C55148 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk429h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 72      6grp_total > 56      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 468.3
(3)
P 		400.2
(-0.4)
P 		407
(-0)
P 		347
(-3)
P 		121
B 495.9
(3)
P 		340.8
(-1.8)
P 		319.6
(-2.5)
P 		303.4
(-3)
P 		193
C 482.9
(3)
P 		298.1
(-3)
P 		367.2
(-0.8)
P 		333.6
(-1.8)
P 		185
avr 482.4
(3) 		346.4
(-2.3) 		364.6
(-1.6) 		328
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 280.3
(-3)
P 		441.1
(3)
P 		369
(0.3)
P 		400.4
(1.5)
P 		279.5
(-3)
P 		435.9
(2.8)
P 		162
B 398.3
(-0.9)
P 		496.3
(1.5)
P 		437.1
(0)
P 		347.7
(-2.2)
P 		313.7
(-3)
P 		558.7
(3)
P 		245
C 332.6
(-2)
P 		535
(3)
P 		480.7
(1.6)
P 		378.5
(-0.9)
P 		293.7
(-3)
P 		504.8
(2.2)
P 		241
avr 337.1
(-1.8) 		490.8
(2.7) 		428.9
(0.9) 		375.5
(-0.7) 		295.6
(-3) 		499.8
(3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 170.5
(3)
P 		86.9
(-1.2)
P 		106.4
(-0.2)
P 		50.8
(-3)
P 		120
B 158.1
(3)
P 		84.2
(-1.7)
P 		74.1
(-2.4)
P 		64.7
(-3)
P 		93
C 159.8
(3)
P 		85.7
(-1.3)
P 		128
(1.2)
P 		56.3
(-3)
P 		104
avr 162.8
(3) 		85.6
(-1.4) 		102.8
(-0.4) 		57.3
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 51.7
(-3)
P 		156.9
(3)
P 		80.4
(-1.4)
P 		101.6
(-0.2)
P 		84.4
(-1.1)
P 		106.1
(0.1)
P 		105
B 138.6
(-0.6)
P 		165.2
(0.8)
P 		106.1
(-2.3)
P 		92.1
(-3)
P 		127.5
(-1.2)
P 		208.3
(3)
P 		116
C 123.3
(0)
P 		163.3
(2.6)
P 		122.3
(-0)
P 		76.1
(-3)
P 		95
(-1.8)
P 		169
(3)
P 		93
avr 104.5
(-1.8) 		161.8
(3) 		102.9
(-1.9) 		89.9
(-3) 		102.3
(-2) 		161.1
(2.9) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174411_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20781
Sequence Type Exemplar sequence
Representative Public ID C55148 NCBI
Target Description C55148_rc /REP_DB=TREMBL Accession /GB=C55148 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk429h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063257 NCBI Caenorhabditis elegans T01H3.2 (T01H3.2) mRNA, complete cds. 11/11 A 
SNAP00000018636 ENSEMBL cdna:SNAP chromosome:CEL140:II:7874224:7877909:-1 11/11 None
GENEFINDER00000018640 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7874224:7877909:-1 11/11 None
T01H3.2 ENSEMBL cdna:known chromosome:CEL140:II:7874178:7877915:-1 gene:T01H3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7874184-7874630(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01H3.2
Entrez Gene 174271 Entrez gene
SwissProt Q22088 EMBL-EBI
WormBase CE23938 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92690 Hypothetical protein T01H3.2 [Caenorhabditis elegans] ref|NP_495658.1| T01H3.2 [Caenorhabditis elegans] 0.0
blast CAE59827 Hypothetical protein CBG03299 [Caenorhabditis briggsae] 0.0
blast EAL30819 GA16767-PA [Drosophila pseudoobscura] 6.0E-31
blast EAL30819 GA16767-PA [Drosophila pseudoobscura] 7.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.7E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.1E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.5E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.7E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.4E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.7E-9
Sequence
Target Sequence 
>C. ELEGANS:174411_S_AT
gcgaattaaatttatcctgttccggattgatacgaaaacatttccgatgcatatcccatg
gacaatctccagcaagcagtcgtcagcgcaagaggttcgatctgtctccgaggcacaaac
attacggttgttcgcgactggcgcgtcgttccgtataccgaccggaaggccacaattatt
gcgatgcgggatgttgaacgtgccacgaacatgggatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAATTAAATTTATCCTGTTCCGG 177 289 58 Antisense
ATTTCCGATGCATATCCCATGGACA 497 17 97 Antisense
GGACAATCTCCAGCAAGCAGTCGTC 183 527 117 Antisense
GCAAGCAGTCGTCAGCGCAAGAGGT 64 321 129 Antisense
CGCAAGAGGTTCGATCTGTCTCCGA 583 253 144 Antisense
GATCTGTCTCCGAGGCACAAACATT 370 417 156 Antisense
TTACGGTTGTTCGCGACTGGCGCGT 343 683 179 Antisense
TCCGTATACCGACCGGAAGGCCACA 571 555 207 Antisense
GAAGGCCACAATTATTGCGATGCGG 167 333 222 Antisense
GATGCGGGATGTTGAACGTGCCACG 195 415 240 Antisense
GAACGTGCCACGAACATGGGATGTC 92 349 253 Antisense
Sequence Source Affymetrix Proprietary Database