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[174410_at]

Description C30904_rc /REP_DB=TREMBL Accession /GB=C30904 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 71      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 953
1 2 3 4 range
A 41.9
(-3)
A 		947.5
(3)
P 		697.4
(1.3)
P 		62.2
(-2.9)
A 		906
B 55.7
(-2.6)
A 		793
(3)
P 		767
(2.8)
P 		6.8
(-3)
A 		786
C 51
(-3)
A 		751.2
(1.6)
P 		959.5
(3)
P 		76.1
(-2.8)
P 		909
avr 49.5
(-3) 		830.6
(3) 		808
(2.8) 		48.4
(-3) 		782

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 123.1
(-3)
P 		552.1
(3)
P 		291
(-0.7)
P 		302
(-0.5)
P 		439.9
(1.4)
P 		198.7
(-1.9)
P 		429
B 180.8
(-3)
P 		451.8
(1.7)
P 		283.6
(-1.2)
P 		346.5
(-0.1)
P 		526.7
(3)
P 		295.6
(-1)
P 		346
C 119.9
(-3)
P 		501.8
(3)
P 		355.5
(0.7)
P 		355.6
(0.7)
P 		453.6
(2.2)
P 		349.8
(0.6)
P 		382
avr 141.3
(-3) 		501.9
(3) 		310
(-0.2) 		334.7
(0.2) 		473.4
(2.5) 		281.4
(-0.7) 		361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 15.2
(-2.8)
A 		205.7
(3)
P 		182.3
(2.3)
P 		9.1
(-3)
A 		197
B 17.8
(-2.5)
A 		195.9
(3)
P 		177.7
(2.4)
P 		1.5
(-3)
A 		194
C 16.9
(-2.9)
A 		216
(0.8)
P 		334.4
(3)
P 		12.8
(-3)
P 		322
avr 16.6
(-2.8) 		205.9
(2.3) 		231.5
(3) 		7.8
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 22.7
(-3)
P 		196.4
(3)
P 		63.4
(-1.6)
P 		76.6
(-1.1)
P 		132.7
(0.8)
P 		48.4
(-2.1)
P 		174
B 62.9
(-3)
P 		150.4
(0.5)
P 		68.9
(-2.8)
P 		91.8
(-1.9)
P 		214
(3)
P 		110.2
(-1.1)
P 		151
C 44.4
(-3)
P 		153.1
(3)
P 		90.5
(-0.5)
P 		71.5
(-1.5)
P 		146.8
(2.7)
P 		117.1
(1)
P 		109
avr 43.3
(-3) 		166.6
(3) 		74.3
(-1.5) 		80
(-1.2) 		164.5
(2.9) 		91.9
(-0.6) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20044
Sequence Type Exemplar sequence
Representative Public ID C30904 NCBI
Target Description C30904_rc /REP_DB=TREMBL Accession /GB=C30904 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058375 NCBI Caenorhabditis elegans Y18H1A.9 (Y18H1A.9) mRNA, complete cds. 11/11 None
Y18H1A.9 ENSEMBL cdna:known chromosome:CEL140:I:748230:757012:-1 gene:Y18H1A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022340 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022385 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:748306-748586(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18H1A.9
Entrez Gene 171666 Entrez gene
SwissProt Q9BL88 EMBL-EBI
WormBase CE30212 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3126.1.S1_S_AT similar to Carboxypeptidase A4 precursor (Carboxypeptidase A3) cfa
DROSOPHILA_2:1624088_AT dm
DROSGENOME1:142938_AT dm
HG-U133_PLUS_2:205832_AT carboxypeptidase A4 hs
HG-U133A:205832_AT carboxypeptidase A4 hs
HG-U133A_2:205832_AT carboxypeptidase A4 hs
HU35KSUBC:RC_H96737_AT carboxypeptidase A4 hs
U133_X3P:G10047105_3P_AT carboxypeptidase A4 hs
HG-U95B:48896_AT carboxypeptidase A4 hs
HG-U95D:85353_AT Carboxypeptidase A4 hs
MG-U74CV2:167133_R_AT carboxypeptidase A4 mm
MOE430B:1453770_AT carboxypeptidase A4 mm
MOUSE430_2:1453770_AT carboxypeptidase A4 mm
MG-U74CV2:133722_AT Carboxypeptidase A4, mRNA (cDNA clone MGC:74350 IMAGE:30249166) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4180 carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490776 Y18H1A.9 [Caenorhabditis elegans] gb|AAK21512.2| Hypothetical protein Y18H1A.9 [Caenorhabditis elegans] 0.0
blast CAE61321 Hypothetical protein CBG05158 [Caenorhabditis briggsae] 0.0
blast NP_001021611 T06A4.3a [Caenorhabditis elegans] gb|AAT81187.1| Hypothetical protein T06A4.3a [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.8E-8
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.5E-44
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 8.2E-31
Pfam IPR003146 EMBL-EBI Peptidase M14A, carboxypeptidase activation peptide 1.8E-16
Sequence
Target Sequence 
>C. ELEGANS:174410_AT
gcccgtcatgggctcaaggcggagcatgcgaaaattggcctgaaatgcggattcggtgcc
caagatcgtgtcaagtctgcgcctaatcaatttctagattcttaatttttttccaatttt
ttcaacaagatcatcatgacgattctagtctcgttaccagtttttcaaatttcaattttt
ctgtgtcttttcattgtgttttttgtgctcctccttaatgtttcgggtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGTCATGGGCTCAAGGCGGAGC 55 287 28 Antisense
GCGGAGCATGCGAAAATTGGCCTGA 318 293 46 Antisense
GCCTGAAATGCGGATTCGGTGCCCA 370 281 65 Antisense
GTGCCCAAGATCGTGTCAAGTCTGC 312 479 83 Antisense
GTCAAGTCTGCGCCTAATCAATTTC 58 465 97 Antisense
GTCTGCGCCTAATCAATTTCTAGAT 391 471 102 Antisense
TTCCAATTTTTTCAACAAGATCATC 167 697 138 Antisense
GATCATCATGACGATTCTAGTCTCG 261 421 156 Antisense
TCTAGTCTCGTTACCAGTTTTTCAA 65 615 171 Antisense
TTTCATTGTGTTTTTTGTGCTCCTC 183 673 216 Antisense
GCTCCTCCTTAATGTTTCGGGTATC 624 257 234 Antisense
Sequence Source Affymetrix Proprietary Database