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[174409_at] Probable rabGAP domains

Description C32164_rc /REP_DB=TREMBL Accession /GB=C32164 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325d7 : 3prime end, single read.
Cluster 4grp_high_8_8 > 01      6grp_total > 05      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 69.8
(3)
P 		8.9
(-3)
A 		43.3
(0.4)
P 		58.9
(1.9)
A 		61
B 24.4
(-0.4)
P 		7.8
(-3)
A 		23.7
(-0.5)
A 		46.5
(3)
P 		39
C 44.8
(3)
A 		42.7
(0.6)
P 		39.5
(-3)
M 		41.3
(-1)
A 		5
avr 46.3
(2.5) 		19.8
(-3) 		35.5
(0.2) 		48.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 3.8
(-2.8)
A 		31.4
(3)
A 		27.1
(2.1)
A 		13.3
(-0.8)
A 		12.2
(-1)
A 		2.8
(-3)
A 		29
B 85.4
(3)
P 		48.1
(0)
P 		30
(-1.4)
A 		9.8
(-3)
A 		24.5
(-1.8)
P 		22.1
(-2)
A 		76
C 31.3
(3)
P 		24.4
(1)
P 		16.1
(-1.4)
A 		30.3
(2.7)
A 		28
(2)
A 		10.8
(-3)
A 		21
avr 40.2
(3) 		34.6
(1.8) 		24.4
(-0.3) 		17.8
(-1.7) 		21.6
(-0.9) 		11.9
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.4
(3)
P 		1.9
(-3)
A 		11.3
(-0.6)
P 		8.6
(-1.3)
A 		24
B 7.8
(1.4)
P 		1.9
(-3)
A 		5.5
(-0.3)
A 		9.9
(3)
P 		8
C 14.8
(3)
A 		12.3
(1.1)
P 		13.8
(2.2)
M 		7
(-3)
A 		8
avr 16
(3) 		5.4
(-3) 		10.2
(-0.3) 		8.5
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.7
(-3)
A 		11.2
(3)
A 		5.9
(-0)
A 		3.4
(-1.5)
A 		3.7
(-1.3)
A 		0.7
(-3)
A 		11
B 29.7
(3)
P 		16
(-0)
P 		7.3
(-2)
A 		2.6
(-3)
A 		10
(-1.4)
P 		8.2
(-1.8)
A 		27
C 11.6
(3)
P 		7.4
(-0.2)
P 		4.1
(-2.6)
A 		6.1
(-1.1)
A 		9
(1.1)
A 		3.6
(-3)
A 		8
avr 14
(3) 		11.5
(1.5) 		5.8
(-1.9) 		4
(-3) 		7.6
(-0.8) 		4.2
(-2.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22092
Sequence Type Exemplar sequence
Representative Public ID C32164 NCBI
Target Description C32164_rc /REP_DB=TREMBL Accession /GB=C32164 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077694 NCBI Caenorhabditis elegans F45E6.3 (F45E6.3) mRNA, complete cds. 11/11 None
F45E6.3 ENSEMBL cdna:known chromosome:CEL140:X:12484975:12491064:1 gene:F45E6.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12490775-12491054(+) 100.0 100.0
Public Domain and Genome References
Gene Title Probable rabGAP domains
Ensembl F45E6.3
Entrez Gene 181406 Entrez gene
SwissProt Q20436 EMBL-EBI
WormBase CE34021 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254730_AT RabGAP/TBC domain-containing protein at
CANINE_2:CFAAFFX.30666.1.S1_AT similar to TBC1 domain family, member 13 cfa
CANINE_2:CFAAFFX.30667.1.S1_S_AT similar to TBC1 domain family, member 13 cfa
DROSOPHILA_2:1640561_AT dm
DROSGENOME1:154257_AT dm
CHICKEN:GGA.6307.1.S1_AT TBC1 domain family, member 13 gga
CHICKEN:GGA.9963.1.S1_AT TBC1 domain family, member 13 gga
CHICKEN:GGAAFFX.26269.1.A1_AT TBC1 domain family, member 13 gga
CHICKEN:GGAAFFX.26271.1.S1_AT TBC1 domain family, member 13 gga
HU35KSUBA:H13458_S_AT TBC1 domain family, member 13 hs
HG-U133A:218596_AT TBC1 domain family, member 13 hs
HG-U133_PLUS_2:218596_AT TBC1 domain family, member 13 hs
HG-U133A_2:218596_AT TBC1 domain family, member 13 hs
U133_X3P:G8922634_3P_S_AT TBC1 domain family, member 13 hs
U133_X3P:G8922634_3P_AT TBC1 domain family, member 13 hs
U133_X3P:218596_3P_AT TBC1 domain family, member 13 hs
HG-U133A_2:44696_AT TBC1 domain family, member 13 hs
HG-U133_PLUS_2:44696_AT TBC1 domain family, member 13 hs
HG-U133A:44696_AT TBC1 domain family, member 13 hs
HG-U95B:44696_AT TBC1 domain family, member 13 hs
MOUSE430_2:1424082_AT TBC1 domain family, member 13 mm
MOE430A:1424082_AT TBC1 domain family, member 13 mm
MOUSE430A_2:1424082_AT TBC1 domain family, member 13 mm
MG-U74BV2:115444_AT TBC1 domain family, member 13 mm
MG-U74BV2:110125_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MOE430B:1442717_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MOUSE430_2:1442717_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MU19KSUBA:TC14956_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
MU19KSUBB:TC33725_AT TBC1 domain family, member 13 (Tbc1d13), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA92181 Hypothetical protein F45E6.3 [Caenorhabditis elegans] ref|NP_510095.2| F45E6.3 [Caenorhabditis elegans] 0.0
blast CAE57239 Hypothetical protein CBG00117 [Caenorhabditis briggsae] 0.0
blast XP_520299 PREDICTED: similar to TBC1 domain family, member 13 [Pan troglodytes] 2.0E-82
Sequence
Target Sequence 
>C. ELEGANS:174409_AT
ttcttcgtttttctttctacgtatgtagtgtcgcaatgtggaaaggaaatcgaaataaca
tcggaaacgtttcgttactataaataagatgaaactttatactatattcaattttattaa
tcacatttttcgtgtaatatcacgaaaacaaaatagggttcctcatttctcttacacttt
ggtcattttgcttcccccccactcaacttttcacctactttgacattttttacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCGTTTTTCTTTCTACGTATG 477 681 24 Antisense
CTACGTATGTAGTGTCGCAATGTGG 104 223 40 Antisense
GTAGTGTCGCAATGTGGAAAGGAAA 673 453 48 Antisense
ACGTTTCGTTACTATAAATAAGATG 338 93 90 Antisense
GATGAAACTTTATACTATATTCAAT 615 407 111 Antisense
TCAATTTTATTAATCACATTTTTCG 688 633 131 Antisense
ATCACATTTTTCGTGTAATATCACG 493 27 143 Antisense
CAAAATAGGGTTCCTCATTTCTCTT 497 189 172 Antisense
CTCATTTCTCTTACACTTTGGTCAT 633 229 185 Antisense
TTACACTTTGGTCATTTTGCTTCCC 10 685 195 Antisense
CACCTACTTTGACATTTTTTACTTG 657 167 235 Antisense
Sequence Source Affymetrix Proprietary Database