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[174408_s_at] protein disulfide isomerase

Description C31880_rc /REP_DB=TREMBL Accession /GB=C31880 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk293f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 05      6grp_total > 09      4grp_total > 50      6grp_cgc > 10      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5302
1 2 3 4 range
A 5292.1
(-2.7)
P 		9587.1
(3)
P 		8399.3
(1.4)
P 		5028.6
(-3)
P 		4559
B 5327.4
(-2.6)
P 		8492.5
(1.4)
P 		9717.3
(3)
P 		5048.3
(-3)
P 		4669
C 5430.7
(-1.6)
P 		8637.1
(3)
P 		7978
(2.1)
P 		4415.6
(-3)
P 		4222
avr 5350.1
(-2.2) 		8905.6
(3) 		8698.2
(2.7) 		4830.8
(-3) 		4075

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3651
1 2 3 4 5 6 range
A 8133.9
(3)
P 		5835.7
(-1.7)
P 		6564.6
(-0.2)
P 		5760.1
(-1.8)
P 		5827
(-1.7)
P 		5189.6
(-3)
P 		2944
B 8731.9
(3)
P 		5497.3
(-2.3)
P 		8054.6
(1.9)
P 		6229.5
(-1.1)
P 		5881.8
(-1.7)
P 		5081.4
(-3)
P 		3651
C 7734.5
(3)
P 		5258.1
(-3)
P 		6412.4
(-0.2)
P 		5488.6
(-2.4)
P 		6586.6
(0.2)
P 		5652.7
(-2)
P 		2476
avr 8200.1
(3) 		5530.4
(-2.5) 		7010.5
(0.5) 		5826.1
(-1.9) 		6098.5
(-1.4) 		5307.9
(-3) 		2892
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2045
1 2 3 4 range
A 1926.9
(1.9)
P 		2081.1
(2.5)
P 		2195.7
(3)
P 		736.1
(-3)
P 		1460
B 1698.9
(0.2)
P 		2097.5
(2.2)
P 		2251.7
(3)
P 		1075.8
(-3)
P 		1176
C 1797.7
(0.1)
P 		2483.2
(2.1)
P 		2780.6
(3)
P 		744.5
(-3)
P 		2036
avr 1807.8
(0.7) 		2220.6
(2.3) 		2409.3
(3) 		852.1
(-3) 		1557

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1935
1 2 3 4 5 6 range
A 1499.4
(-1.3)
P 		2075.5
(3)
P 		1429.6
(-1.8)
P 		1460.9
(-1.5)
P 		1758.3
(0.7)
P 		1263.5
(-3)
P 		812
B 3038.3
(3)
P 		1829.8
(-2.2)
P 		1955.9
(-1.7)
P 		1650
(-3)
P 		2389.7
(0.2)
P 		1894.8
(-1.9)
P 		1388
C 2866.8
(3)
P 		1604.4
(-1.3)
P 		1632.1
(-1.2)
P 		1103.8
(-3)
P 		2131.3
(0.5)
P 		1892.3
(-0.3)
P 		1763
avr 2468.2
(3) 		1836.6
(-0.6) 		1672.5
(-1.5) 		1404.9
(-3) 		2093.1
(0.9) 		1683.5
(-1.4) 		1063
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21169
Sequence Type Exemplar sequence
Representative Public ID C31880 NCBI
Target Description C31880_rc /REP_DB=TREMBL Accession /GB=C31880 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk293f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065345 NCBI Caenorhabditis elegans Protein Disulfide Isomerase family member (pdi-1) (pdi-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000040973 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3699785:3701433:-1 11/11 None
SNAP00000040957 ENSEMBL cdna:SNAP chromosome:CEL140:III:3699830:3701433:-1 11/11 None
C14B1.1.2 ENSEMBL cdna:known chromosome:CEL140:III:3699717:3701454:-1 gene:C14B1.1 11/11 A 
C14B1.1.3 ENSEMBL cdna:known chromosome:CEL140:III:3699717:3701526:-1 gene:C14B1.1 11/11 None
C14B1.1.1 ENSEMBL cdna:known chromosome:CEL140:III:3699717:3701439:-1 gene:C14B1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3699789-3700124(-) 89.01 100.0
Public Domain and Genome References
Gene Title protein disulfide isomerase
Gene Symbol pdi-1
Ensembl C14B1.1
Entrez Gene 175472 Entrez gene
SwissProt Q17967 EMBL-EBI
WormBase CE00897 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16853 isomerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85491 Hypothetical protein C14B1.1 [Caenorhabditis elegans] ref|NP_497746.1| Protein Disulfide Isomerase family member (pdi-1) [Caenorhabditis elegans] sp|Q17967|PDI1_CAEEL Protein disulfide-isomerase 1 precursor (PDI 1) (Prolyl 4-hydroxylase beta 1 subunit) gb|AAB94647.1| protein disulphide isomerase isoform I [Caenorhabditis elegans] 0.0
blast CAB40204 disulphide isomerase [Caenorhabditis briggsae] emb|CAB40200.1| disulphide isomerase [Caenorhabditis briggsae] emb|CAE64479.1| Hypothetical protein CBG09203 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.0E-47
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 9.7
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:174408_S_AT
gctgagaagtacgagtccaacccaaatgttgtcattgcaaagcttgatgagcttgccgac
gtcaaggtcaactctttcccaaccctgaagctgtggccagccggatcttctaccccagtc
gactatgatggagacagaaacctcgagaagttcgaagaatttgtcaacaagtatgctgga
tctgcttccgaatctgaaaccgcatctcaggatcacgaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAGAAGTACGAGTCCAACCCAA 200 297 18 Antisense
ACGAGTCCAACCCAAATGTTGTCAT 633 93 28 Antisense
AATGTTGTCATTGCAAAGCTTGATG 249 165 42 Antisense
GAGCTTGCCGACGTCAAGGTCAACT 168 389 66 Antisense
GCCGACGTCAAGGTCAACTCTTTCC 616 283 72 Antisense
CTTCTACCCCAGTCGACTATGATGG 236 219 124 Antisense
TACCCCAGTCGACTATGATGGAGAC 82 649 128 Antisense
ATTTGTCAACAAGTATGCTGGATCT 566 15 176 Antisense
GTATGCTGGATCTGCTTCCGAATCT 333 455 188 Antisense
GAATCTGAAACCGCATCTCAGGATC 269 323 207 Antisense
ACCGCATCTCAGGATCACGAAGAGC 670 87 216 Antisense
Sequence Source Affymetrix Proprietary Database