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[174402_at]

Description C37137_rc /REP_DB=TREMBL Accession /GB=C37137 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk459e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_highest_nonorm > 61      6grp_total > 21      4grp_total > 21      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 370.7
(0.5)
P 		354.9
(0.2)
P 		209.4
(-3)
P 		484.5
(3)
P 		275
B 435.3
(3)
P 		227.8
(-2.8)
P 		220.1
(-3)
P 		287.6
(-1.1)
P 		215
C 347.8
(0.1)
P 		247.3
(-2)
P 		200.7
(-3)
P 		488.6
(3)
P 		288
avr 384.6
(2) 		276.7
(-1.1) 		210.1
(-3) 		420.2
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 717
1 2 3 4 5 6 range
A 488.6
(2.1)
P 		308.6
(-0.2)
P 		557.6
(3)
P 		180.1
(-1.9)
P 		355.7
(0.4)
P 		90.6
(-3)
P 		467
B 529
(0.8)
P 		703
(3)
P 		478.8
(0.2)
P 		418.1
(-0.6)
P 		229
(-3)
P 		275.9
(-2.4)
P 		474
C 166.8
(-2.5)
P 		807.6
(3)
P 		246.3
(-1.9)
P 		499.5
(0.3)
P 		113.7
(-3)
P 		258.5
(-1.7)
P 		694
avr 394.8
(-0.2) 		606.4
(3) 		427.6
(0.3) 		365.9
(-0.6) 		232.8
(-2.6) 		208.3
(-3) 		398
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 135
(3)
P 		77
(-1.3)
P 		54.7
(-3)
P 		70.9
(-1.8)
P 		80
B 138.8
(3)
P 		56.3
(-2.6)
P 		51
(-3)
P 		61.3
(-2.3)
P 		88
C 115.1
(3)
P 		71.1
(-2.9)
P 		70
(-3)
P 		82.4
(-1.4)
P 		45
avr 129.6
(3) 		68.1
(-2.2) 		58.6
(-3) 		71.5
(-1.9) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 90.1
(1.1)
P 		109.8
(2.3)
P 		121.4
(3)
P 		45.7
(-1.6)
P 		107.3
(2.1)
P 		22.1
(-3)
P 		99
B 184.1
(0.9)
P 		234
(3)
P 		116.3
(-2)
P 		110.7
(-2.3)
P 		93.1
(-3)
P 		102.9
(-2.6)
P 		141
C 61.8
(-2.3)
P 		246.4
(3)
P 		62.7
(-2.3)
P 		100.5
(-1.2)
P 		36.8
(-3)
P 		86.5
(-1.6)
P 		210
avr 112
(-1) 		196.7
(3) 		100.1
(-1.6) 		85.6
(-2.3) 		79.1
(-2.6) 		70.5
(-3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20390
Sequence Type Exemplar sequence
Representative Public ID C37137 NCBI
Target Description C37137_rc /REP_DB=TREMBL Accession /GB=C37137 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk459e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C37137
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C37137 C37137_rc /REP_DB=TREMBL Accession /GB=C37137 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk459e7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059617 11/11 Negative Strand Matching Probes A 
SNAP00000021173 9/11 Negative Strand Matching Probes None
GENEFINDER00000021181 9/11 Negative Strand Matching Probes None
K10D3.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7136004-7136283(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174402_AT
atcttcttttttcatttgacatctctctcgaaactgttgagagtctaaagaatcagttga
tacagaaggatcaactgattcaaagagcatcgaatcttctccacaaaagttgagagcagc
gattcgagcatcaatgtcatcgggccattgatcctcttcaggcatcatgtgcagttcgca
cagttccaccattttggtggaagaattgagggatgaagccctttgtagacgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCTTTTTTCATTTGACATCTC 622 31 17 Antisense
TTGACATCTCTCTCGAAACTGTTGA 90 705 32 Antisense
GGATCAACTGATTCAAAGAGCATCG 139 511 84 Antisense
AGAGCATCGAATCTTCTCCACAAAA 666 69 100 Antisense
GCAGCGATTCGAGCATCAATGTCAT 248 315 132 Antisense
CAATGTCATCGGGCCATTGATCCTC 411 183 148 Antisense
CATTGATCCTCTTCAGGCATCATGT 74 215 162 Antisense
TTCAGGCATCATGTGCAGTTCGCAC 507 685 173 Antisense
ATGTGCAGTTCGCACAGTTCCACCA 24 49 183 Antisense
TCGCACAGTTCCACCATTTTGGTGG 275 599 192 Antisense
GGGATGAAGCCCTTTGTAGACGTTC 450 495 226 Antisense
Sequence Source Affymetrix Proprietary Database