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[174399_at]

Description C54535_rc /REP_DB=TREMBL Accession /GB=C54535 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk360d2 : 3prime end, single read.
Cluster 6grp_total > 33      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 47.5
(1.2)
A 		61.6
(3)
A 		15.4
(-3)
A 		20.4
(-2.4)
A 		46
B 37.8
(1.5)
A 		22.9
(-3)
A 		39.4
(2)
A 		42.8
(3)
A 		20
C 58.9
(0.9)
A 		7.6
(-3)
A 		34.9
(-0.9)
A 		87.5
(3)
A 		80
avr 48.1
(2.4) 		30.7
(-2.8) 		29.9
(-3) 		50.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 38.6
(3)
A 		1
(-3)
A 		25.3
(0.9)
A 		25.4
(0.9)
A 		6.4
(-2.1)
A 		9.4
(-1.7)
A 		38
B 30.4
(-0.3)
A 		12.3
(-2.2)
A 		61.5
(3)
A 		4.7
(-3)
A 		29.9
(-0.3)
A 		15.7
(-1.8)
A 		57
C 32
(0.9)
A 		47.8
(3)
A 		6
(-2.7)
A 		11.1
(-2)
A 		15.6
(-1.4)
A 		3.6
(-3)
A 		44
avr 33.7
(3) 		20.4
(-0.3) 		30.9
(2.3) 		13.7
(-2) 		17.3
(-1.1) 		9.6
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.3
(3)
A 		13.4
(1.4)
A 		4
(-2.6)
A 		3
(-3)
A 		14
B 12.1
(3)
A 		5.7
(-3)
A 		9.1
(0.2)
A 		9.1
(0.2)
A 		6
C 19.5
(3)
A 		2.2
(-3)
A 		12.2
(0.5)
A 		14.8
(1.4)
A 		17
avr 16.3
(3) 		7.1
(-3) 		8.4
(-2.2) 		9
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.1
(3)
A 		0.4
(-3)
A 		5.5
(1.6)
A 		6.4
(2.4)
A 		1.9
(-1.7)
A 		2.3
(-1.3)
A 		7
B 10.6
(1.1)
A 		4.1
(-1.7)
A 		14.9
(3)
A 		1.2
(-3)
A 		12.2
(1.8)
A 		5.8
(-1)
A 		14
C 11.9
(1.8)
A 		14.6
(3)
A 		1.5
(-2.9)
A 		2.2
(-2.6)
A 		5
(-1.3)
A 		1.2
(-3)
A 		13
avr 9.9
(3) 		6.4
(-0.1) 		7.3
(0.7) 		3.3
(-2.8) 		6.4
(-0.1) 		3.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22419
Sequence Type Exemplar sequence
Representative Public ID C54535 NCBI
Target Description C54535_rc /REP_DB=TREMBL Accession /GB=C54535 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk360d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y102A11A.3 ENSEMBL cdna:known chromosome:CEL140:X:2019388:2025731:1 gene:Y102A11A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043298 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2025441-2025721(+) 100.0 100.0
chrII:1823651-1823934(+) 98.57 98.57
Public Domain and Genome References
Ensembl Y102A11A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69073 Hypothetical protein Y102A11A.3 [Caenorhabditis elegans] ref|NP_508372.2| Y102A11A.3 [Caenorhabditis elegans] 0.0
blast CAE58919 Hypothetical protein CBG02178 [Caenorhabditis briggsae] 3.0E-32
Sequence
Target Sequence 
>C. ELEGANS:174399_AT
tttaccacccacatctcaatgaagtgtttaaacagtgcctaaactgtcttcccaagtttc
gaaccttatcaattttctctttctgagtctcgcaaattttcatttcacccagtactttaa
ggcgatcgcttacattttgtgtggcaccgatctgttatcagtttttatgtgtgcctgtgt
gcgtgtgtgttgtgcatgaagagtcgtttatgacttttctaaccaacttgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACCACCCACATCTCAATGAAGT 82 669 17 Antisense
AACAGTGCCTAAACTGTCTTCCCAA 203 135 47 Antisense
TGTCTTCCCAAGTTTCGAACCTTAT 480 557 61 Antisense
CAATTTTCTCTTTCTGAGTCTCGCA 202 181 86 Antisense
GTCTCGCAAATTTTCATTTCACCCA 507 469 103 Antisense
CACCCAGTACTTTAAGGCGATCGCT 306 199 122 Antisense
GGCGATCGCTTACATTTTGTGTGGC 38 543 137 Antisense
TTGTGTGGCACCGATCTGTTATCAG 212 709 153 Antisense
AGTTTTTATGTGTGCCTGTGTGCGT 393 63 176 Antisense
TGCCTGTGTGCGTGTGTGTTGTGCA 628 585 188 Antisense
ATGACTTTTCTAACCAACTTGATTT 475 45 226 Antisense
Sequence Source Affymetrix Proprietary Database